BAC Information

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BAC

Clone NameMSMg01-352D24
Chromosome14 (Build37)
Map Location 111,498,428 - 111,498,780
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D24.T7 (MSMg01no352_d24.b1)MSMg01-352D24.TJ (MSMg01no352_d24.g1)
ACCAG463423AG463424
length786812
length of high quality
(start - end)		476 (46 - 521)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no352_d24.b1 PHD_FILE: MSMg01no352_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:43 2005CHROMAT_FILE: MSMg01no352_d24.g1 PHD_FILE: MSMg01no352_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCTCAACTCATTTACACTGAATGGCTGAGAAGCACCTAAAGAAATGT
TCAACATCCTTAGTATCAGGGAAATGCAAATGAAAATGCCACTGAGATTG
GACCTCACACCTGTCAGAATGGCTAACATCAAAAACTCAGGTGACAGTGA
CAGCAGATATTGGCAAGGATGTGGAGAAAGAAGAACACTCCTTCACTGCT
GGTGGGATGGCAATCTGGTACAACCACTCTGGAAATCAATTTAGTGGTTC
TTCAGAATATTGGATATATTACTACTGTAGGATCCATCAATACCACTCCT
GGGCATATACCCAGAAGATGATTCAACATGTAATGTAGACGCATGCTCAA
AAATGTCCTTATCAGACTATTTATAATAGTTAGAATCTGGAAATAACCCA
GATGCCCCTCAGCAGATAAATGGATACAGAAAATTAGGTATATTTGCACA
ACGGGGTACTATGCAGCTATTATAATCAACAAATTTATGAAATACTTATA
AAAATGGATGTATGTGGAGGATATTATTCTGAGAGAGGTAACCCAATCCC
CAAAGACACACCTGATATGCTCTCCCTGATAATGGACTTTTAAACCCAAA
CTATGAGTCCCCCCAAACACTTCGATAAACCATGGCCCCCCCGCCTATTA
TCCAAAAAGGGCTACCCCCAACCCCAGTTAAAACAAACCCTTGGGCTTTT
TACAACTGGGTCCCCCTACCGGGAAATAACATCCCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGGTTGAAAACCAGGCAATT
TTAGAAATCCTTTATGAACCATACATGTTACATATCTTTTAATTTTCATT
TATTAAATGTAAATCAATATAATAAGTAATGACTGTCTCCTGTGATAGGA
CAACATATAGCATCAGTACAAAGCTCTTGACTTTAATGCCAACTGAGCTA
TCCAATCCTCTCCCAAAGTAATTACTACATGCTGACAATTCTTGTGTTTC
TGGTATATGATTACCTTTGGTGTCATTAAACAAAAGCAAGTGGACAAATC
TGTACAGTTGAATTGAACCTCCACTTATTTTGAGTGTGCAACAAAGTTTT
AGCCTCATGTACTACACCCTCACACTTAGTCTGCCACACAAAGGACATCT
CCAGATTGTCTCCTCAAAGATGAAAATTAATCTGCTTTATTATAACTTAT
TCCATTTTCTTGCTGAAAACCTTGCCATTAATTTTGGAACCAATATTACT
TACTCCAAATGGATTTTTGAAATAGGGACTATTATGCACACCCCCCCACT
TTTTAATTTCTTCTTTTATCATAACAAACGCTTACTGAACCTCTTCAACC
CCTATTTTGCCCTTTTTTTCCTTATTTTCCCTTTTTTAACCTACTTTTTT
TCCCTTTTATATTTTTTTCCCCCTCTCTCCCCTTTTCTCACTCACCTTTT
CTCCCCCCCCCACTTTTTTTTTTTCGCCTTTTCCTTTTTTTCCCTTTTCC
CTTCTCAATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d24.g1 MSMg01no352_d24.g1 CHROMAT_FILE:
MSMg01no352_d24.g1 PHD_FILE: MSMg01no352_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:43 2005
         (346 letters)



>mm_chr14_111498369_111499114
          Length = 746

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/353 (98%), Gaps = 7/353 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaggttgaaaaccaggcaattttagaaatcctttatgaaccatacatgttacatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 caaaaggttgaaaaccaggcaattttagaaatcctttatgaaccatacatgttacatatc 353

                                                                       
Query: 61  ttttaattttcatttattaaatgtaaatcaatataataagtaatgactgtctcctgtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttaattttcatttattaaatgtaaatcaatataataagtaatgactgtctcctgtgat 293

                                                                       
Query: 121 aggacaacatatagcatcagtacaaagctcttgactttaatgccaactgagctatccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aggacaacatatagcatcagtacaaagctcttgactttaatgccaactgagctatccaat 233

                                                                       
Query: 181 cctctcccaaagtaattactacatgctgac-------aattcttgtgtttctggtatatg 233
           ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 232 cctctcccaaagtaattactacatgctgacaagtggtaattcttgtgtttctggtatatg 173

                                                                       
Query: 234 attacctttggtgtcattaaacaaaagcaagtggacaaatctgtacagttgaattgaacc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 attacctttggtgtcattaaacaaaagcaagtggacaaatctgtacagttgaattgaacc 113

                                                                
Query: 294 tccacttattttgagtgtgcaacaaagttttagcctcatgtactacaccctca 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tccacttattttgagtgtgcaacaaagttttagcctcatgtactacaccctca 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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