BAC Information

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BAC

Clone NameMSMg01-352L08
Chromosome14 (Build37)
Map Location 78,666,209 - 78,666,559
singlet/doubletsinglet
Overlap genenone
Upstream geneD230005D02Rik, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L08.T7 (MSMg01no352_l08.b1)MSMg01-352L08.TJ (MSMg01no352_l08.g1)
ACCAG463768AG463769
length787784
length of high quality
(start - end)
207 (52 - 258)351 (84 - 434)
definitionCHROMAT_FILE: MSMg01no352_l08.b1 PHD_FILE: MSMg01no352_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005CHROMAT_FILE: MSMg01no352_l08.g1 PHD_FILE: MSMg01no352_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCCCTATAGCCTACATCGTGTGAGCAAGTGCTCTACCCT
AAGATATACTCCCAATTTTCTGTATAATCCTGTTTAACTTTCATACCAAG
TGTGTGAGTCAAATATCATTAGTCCTGTTGGATAGATGGAAAAATCTGCT
GCCCAAGAGGTTTAACAGCTTGAGTATTAAGTGGTAGTCTTGGGATGTAA
ATGTATACAGACAGGATGCAGAGTTTGTTCCAGTGTCTGCTGTTGCTGGA
GTCCCTTTGCTGTTGTTGGTATAACCTGGATAGGATAAATGGTAAGGTCT
GACGTTCTCTCATTTACAGATGTGCCTTTTCCTGTTTTCCCGCATTGCTT
CCAACTGATGCTCAACTTTCCCCTTGCCTTATGAATAATACAACTTTTTA
TTCTCTCCCTCCTTACTCCCGATTTCTCTCACCAGTTCATCTCCCTGCTT
TACTCCTATCTCCCCCATATTTGTTCTTCTCACCTCCTGTTCCTCTATTC
TTTTCTTCTTCTTTTTCCCCTTCCATCCCCCTTTTTTCCCCTTACCCTTC
CCACCCTTTTTTTCTCTATCCCCTCTTCTATTTTTTTTTTTCCCTTCTTT
GTTCCCTTTTTCCTCTTTTTTTTTTTCTCCTCTCTTTTTTCTTTATACCC
CCCTCCTATTTTATTCTTCTTTCCTATCTTCATCTTTATTTCCTTCCTTC
TTTTTCCATTCTTCTCCATCTATTTTACCTATACTTN
NNCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGTTCAGGGCAA
CTACATGGGCCCCCACAGGAGTGGGGTGAAGACCACATGGGCAGAGACTA
CGATGCTGTGAGATCAGGATCCTAGACCAGTTTTCAATGATCATTTTTAA
CTTGGGGTAAAAGCTTAACTTTCCTCTAATGCCACTTCATTGTTCATAAA
ATTGAAATCATAACGGCCATCTAATGTACCTCTCTAATAACCAAGTAACT
TATCTTCTGGGTTTCCGAGAGTTCATGTAAACAACACATATAGATATCGA
GAATGAAGTGAATGAGGGACTGAGTCGGTTGGCGCTCACAGCTTTCCTGA
GCTTTCTCCACGTCTGCTCATTCTTGACCCTGGTTTGGTGTCACCTCCTC
CCCAATGAGCATCCCTAGGGGATTCCCCCGGGATCAGTCTTCTTCTTGCC
CCGCCTTCTTGGACTGAACTTTGCTGCCCGTACTCTTTCCCCTTTTCCTG
GTTTATCCCGTCTATCCTCTCACTATACCCCCGCCTCGGGATTTTCTTGT
TTTTTTTTCCCTTGCCCCCCTTTTTTCCCCTTATTTCCCCCTTTTCCCTT
TCTTTCCCCTCATTTCCTTCCCTTTCTTTTTTTTTTCCCCCCTCCTCTTC
TTTCCTTCCTCCATTTCCCCTCCCCCCCCTTTTTTTTTTTTCCCCCCTTT
CTCTTTCTCTTCCCTTTTTCCCGTCCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l08.g1 MSMg01no352_l08.g1 CHROMAT_FILE:
MSMg01no352_l08.g1 PHD_FILE: MSMg01no352_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:21 2005
         (351 letters)



>mm_chr14_78666009_78666759
          Length = 751

 Score =  640 bits (331), Expect = 0.0
 Identities = 346/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaggttcagggcaactacatgggcccccacaggagtggggtgaagaccacatgggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttcaggttcagggcaactacatgggcccccacaggagtggggtgaagaccacatgggca 492

                                                                       
Query: 61  gagactacgatgctgtgagatcaggatcctagaccagttttcaatgatcatttttaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gagactacgatgctgtgagatcaggatcctagaccagttttcaatgatcatttttaactt 432

                                                                       
Query: 121 ggggtaaaagcttaactttcctctaatgccacttcattgttcataaaattgaaatcataa 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 ggggtaaaagcttaactttcctctaacgccacttcattgttcataaaattgaaatcataa 372

                                                                       
Query: 181 cggccatctaatgtacctctctaataaccaagtaacttatcttctgggtttccgagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cggccatctaatgtacctctctaataaccaagtaacttatcttctgggtttccgagagtt 312

                                                                       
Query: 241 catgtaaacaacacatatagatatcgagaatgaagtgaatgagggactgagtcggttggc 300
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||  ||
Sbjct: 311 catgtaaacaacacatgtagatatcgagaatgaagtgaacgagggactgagtcggtcagc 252

                                                              
Query: 301 gctcacagctttcctgagctttctccacgtctgctcattcttgaccctggt 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gctcacagctttcctgagctttctccacgtctgctcattcttgaccctggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)