BAC Information

Click to search

BAC

Clone NameMSMg01-352M12
Chromosome14 (Build37)
Map Location 16,491,392 - 16,491,793
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352M12.T7 (MSMg01no352_m12.b1)MSMg01-352M12.TJ (MSMg01no352_m12.g1)
ACCAG463823AG463824
length762761
length of high quality
(start - end)
450 (53 - 502)415 (84 - 498)
definitionCHROMAT_FILE: MSMg01no352_m12.b1 PHD_FILE: MSMg01no352_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:27 2005CHROMAT_FILE: MSMg01no352_m12.g1 PHD_FILE: MSMg01no352_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAAATGGGGTTAT
TTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATTGAAAGAGTAGT
AAACTCAGTGCTTCAAGGTATGCTAATCATAAAACAGATAGCGACATTCC
TCCACCCACCCGCTTCCTGTGTTCAAGAGTATTAATTCAAAGAAAGTCAC
CCTGACCATTACTGGAACCTGCAATGCAAATGTGCTATTGTTAGGGGCTC
TTAGAAACTGTCTTGAGAGTTAACAATTACCAGGTATTCCTTGTGACACC
TGTGACTTTGTACTTCCTTGTGACTCTTAACTAGTATTTTTGGTATTTTC
CAACAACGCTTTTCCCACCTCCTTGAGTTGTGGTTTTTTTCCTTTAAATA
CCCCCTTACTCAGCTACTCGGGGCGCCACGGTCCTCTACCCCTGCATGGT
GTATGACCATGGGCCCGAGAGCGCTCTTGAATAAAAAAATCCTCTCGCAA
TTTGCACCATGAACGCTTTCTTGTGGTTGCATTTCGGTGGGTCCCCCTTC
CCTGCATCTCAACACCGGCATCACTCCCTATGCTCTCTCCCTCTCTTCCC
CTCCTTCTGCTCCTTCATCTTTTTTTCCTCCCCTCTTCCCCCCTTCCCCT
TATTATTTTTCCCCCCTCCCCCCCCGTCCTAATTTTTCCCTTTCCCTCCC
CCCCTTCTTCTT
NTTTTGTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCTTTCATTAAAGT
GAATATATTTAAAGTCAAATATCCAGGAGAGAGTTCATATAGAGAAGGGA
TATCTTTGAAACAAAAAAGAGAAAGTCTGACAATAGATTAGAAATATTTG
CAAAAGGATTAGTAGTTCTACCTGTAATATCCACAGCCCATAAGCACACA
AAGAGATGCTCAATCTCATTAGCAATCATGAAAAGATAACCTCCCTATTG
CCTAAGTTGACTCATGATGTAACATTTACACATGTGCATACATAAGTACA
CACACAGAACTTAATTATGTGTTCACTAATAAATGTGAATTTCTCAGATT
GGAACTAAATGATAAACACTTAGAGAGCCACTGAATTTATTGGGGAAACT
CACAGAAATATGGATAATGGGTTATTTCCTGGTGATTCAAAGGCAGCTGC
CTCACCATAAAGCCCTCCCCAGCAAGGGGAAATACTAATGATAGCTGGAT
TTCTAGTGTTGCCTGTCCTGGCTTTCCAATACTTACCTGGTTGGCAAATC
CTCTCTCTCCCCTCCAATATTCTGGTTACTTATCCCTCCGGCAAAAGCCC
GGCCCCTCTCTTTCTTTCCCCCCCCCCCTTTACTCTCCTCACCCCTTTCA
CCTCCTTCCGTTCTTACTAGACGCTCTCTTCTTTATTCCCCCATTCTTTC
CCCCTTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_m12.g1 MSMg01no352_m12.g1 CHROMAT_FILE:
MSMg01no352_m12.g1 PHD_FILE: MSMg01no352_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:27 2005
         (415 letters)



>mm_chr14_16491192_16492006
          Length = 815

 Score =  737 bits (381), Expect = 0.0
 Identities = 401/415 (96%), Gaps = 13/415 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctttcattaaagtgaatatatttaaagtcaaatatccaggagagagttcatataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactctttcattaaagtgaatatatttaaagtcaaatatccaggagagagttcatataga 260

                                                                       
Query: 61  gaagggatatctttgaaacaaaaaagagaaagtctgacaatagattagaaatatttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagggatatctttgaaacaaaaaagagaaagtctgacaatagattagaaatatttgcaa 320

                                                                       
Query: 121 aaggattagtagttctacctgtaatatccacagcccataagcacacaaagagatgctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aaggattagtagttctacctgtaatatccacagcccataagcacacaaaaagatgctcaa 380

                                                                       
Query: 181 tctcattagcaatcatgaaaagataacctccctattgcctaagttgactcatgatgtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||          ||  
Sbjct: 381 tctcattagcaatcatgaaaagataacctccctattgcctaagttg----------ta-- 428

                                                                       
Query: 241 atttacacatgtgcatacataagtacacacacagaacttaattatgtgttcactaataaa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 -tttacacatgtgcatacataagtacacacacagaacttaattatgtgttcactaataaa 487

                                                                       
Query: 301 tgtgaatttctcagattggaactaaatgataaacacttagagagccactgaatttattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtgaatttctcagattggaactaaatgataaacacttagagagccactgaatttattgg 547

                                                                  
Query: 361 ggaaactcacagaaatatggataatgggttatttcctggtgattcaaaggcagct 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggaaactcacagaaatatggataatgggttatttcctggtgattcaaaggcagct 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)