BAC Information

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BAC

Clone NameMSMg01-352O07
Chromosome14 (Build37)
Map Location 84,331,552 - 84,398,038
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352O07.T7 (MSMg01no352_o07.b1)MSMg01-352O07.TJ (MSMg01no352_o07.g1)
ACCAG463907AG463908
length747734
length of high quality
(start - end)
106 (84 - 189)120 (86 - 205)
definitionCHROMAT_FILE: MSMg01no352_o07.b1 PHD_FILE: MSMg01no352_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:36 2005CHROMAT_FILE: MSMg01no352_o07.g1 PHD_FILE: MSMg01no352_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,397,933 - 84,398,038)(84,331,552 - 84,331,671)
sequence
TTTGGGTGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATTATTTCCTCTGACTGTTTCCTTACTCCACTTT
CTCTTCTGACTTCCCCTATTTTTTTATCCTTGGAGGGAAACCAAAAATAT
TCATACCATGGGACTCTTACCTTAACACATTTTACATGGTCTCTTAGAAA
CTTCTGATTTTGTAGACAGGACATATACTCATAGAAACTTATTTCTAAAA
CACTGAAACTTTTCTAGCGATTTACATAAATAGTAGTTGCTCAGTTGAAA
TTCTCACACAGCAAATATATAAAAGAAGTATTGTGGCAAATATATTTAAA
TGATTTTGAATTTTTAAAATCAGAGGGAGAAAGTGTTTCAGTTATTATCT
GAAACTTTTTTTTTCTCTCAGAAAACCAATATATGTGAGAAAGAAAAGAG
TTATCTTTCACATCCAGGTTTTAGAATCTTTGATTTGGTGTTGACAAAAA
CACAATTATAGATCTTGGCCCTCAATGATGAGCTTCACTTATCTCGCGTT
CATGCCTCTTCACGGACGGTTTTACCATATGTAAGCATCTCGTCCTTTCT
CCGAGACTAATGTAACTGGTTGCTCAGAACCCTTTGACCTATACCCCCTT
TTTTCTTCTATTACCTCCCCTTTGCCTTTCTACTTTTCTCGCCCTTTTCC
TTCCTATTTCCTACATCCAACCTTTTTCCCGTACCCTCCCTTCTCCC
CTAATTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTCGTGCACTG
CCAGTGGTACCCAGCTGCATTGTTCTTCCAACTGAAGGACTGAAGACCAG
TGAACACCCATGATTTCTCCAGGCCATGGGAGGCAGATGAGGACTGCTCT
GTAAGATGCAGAAAATTGCATCTAATGTAGAAAATTGGAACAGGGGCATG
AGTGGTCATAGGAACTAAATTTGACCTTGCATTCCTTACCCTTTGGAAAC
TGAATTATGGGCCAAATTTAGAAATCTTTGGAGAGATGCACTGAAAGAGC
CTATGATTCTATAAGTACAACTTAATGGGTGATCTAGTGAGATCTCAGAA
AACAATGCCAACAGTGAAGGCTGCAGACTTTCTCAGCAATTAAAGTTGAA
GTCCTTTTACATCTCATCCTCCAGAGGGATTTTTTTCTCCTTTTGATCTA
TACCTGCAGGTTTCGCATGACTTTGAGATTACCTAAAAATGACTGCATGA
TTAATTTTGATCTTCCCTCCACCCTGCTAATCAATGGCCTATCTGTTCAC
TGTGCCCAAAGTTCCTAAGGACCTCTGTCTTAATCCTAAGATGTCCCACG
GAACATATTATAGACTAAGGGTTCTCACATTTTCCTCCTCAACTTGTCAT
AAAATCTTGCTACATCCCTTCTCTTCCCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_o07.b1 MSMg01no352_o07.b1 CHROMAT_FILE:
MSMg01no352_o07.b1 PHD_FILE: MSMg01no352_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:36 2005
         (106 letters)



>mm_chr14_84397733_84398238
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccttactccactttctcttctgacttcccctatttttttatccttggagggaaacca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttccttaatccactttctcttctgacttcccctatttttttatccttggagggaaacca 247

                                                         
Query: 61  aaaatattcataccatgggactcttaccttaacacattttacatgg 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaatattcataccatgggactcttaccttaacacattttacatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no352_o07.g1 MSMg01no352_o07.g1 CHROMAT_FILE:
MSMg01no352_o07.g1 PHD_FILE: MSMg01no352_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:36 2005
         (120 letters)



>mm_chr14_84331352_84331871
          Length = 520

 Score =  224 bits (116), Expect = 1e-63
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcactcgtgcactgccagtggtacccagctgcattgttcttccaactgaaggactgaag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcactcatgcactgccagtggtacccagctgcattgttcttccaactgaaggactgaag 260

                                                                       
Query: 61  accagtgaacacccatgatttctccaggccatgggaggcagatgaggactgctctgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagtgaacacccatgatttctccaggccatgggaggcagatgaggactgctctgtaag 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)