Query= MSMg01no353_c01.b1 MSMg01no353_c01.b1 CHROMAT_FILE:
MSMg01no353_c01.b1 PHD_FILE: MSMg01no353_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
(527 letters)
>mm_chr14_11636424_11637354
Length = 931
Score = 917 bits (474), Expect = 0.0
Identities = 514/530 (96%), Gaps = 8/530 (1%)
Strand = Plus / Plus
Query: 4 ggaattctaaacatatatttagtcatgcattcttattgacacttat-----caatttaac 58
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattctaaacatatatttagtcatgcattcttattgacacttataatatcaatttaac 263
Query: 59 aactccatgcttttactggctttctgctattctatgtgtgtattatcctttttctacagt 118
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 aactccatgcttttactggctttctgctattccatgtgtgtattatcctttttctacagt 323
Query: 119 gataaccttagttcctctcaaagtatccctctaaccctaaagtagatagaaaacaacttc 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gataaccttagttcctctcaaggtatccctctaaccctaaagtagatagaaaacaacttc 383
Query: 179 aaaattgttcctcaggcactattccaaacaatagatgtaaaaagcttagggtttctctcc 238
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 aaaattgttccttgggcactattccaaacaatagaggtaaaaagcttagggtttctctcc 443
Query: 239 atttttctcctctttaaaactgaagacacacagttaagataggaagcctttttttatggt 298
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 444 atttttctcctctttaaaactgaagacacacagttaaggtaggaagcctttttt-atggt 502
Query: 299 gacgttgtctgtccatgtactgtgcaattgggcataattacttctggattctttacattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 gacgttgtctgtccatgtactgtgcaattgggcataattacttctggattcattacattt 562
Query: 359 t-ctctccaatccttgtggattatacttataaaaattaacctagtttcaaagataatact 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttctctccaatccttgtggattatacttataaaaattaacctagtttcaaagataatact 622
Query: 418 atacaaaggtacatccacagaaatatcacttcttttctttcctgtcttgcctaccaattt 477
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 atacaaaggtacatccacagaaatatcactt-ttttctttcctgtcttgcctaccaattt 681
Query: 478 cactacttccaagttcacgtttcctgtatttctttggcaaaaacataagg 527
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cacttcttccaagttcacgtttcctgtatttctttggcaaaaacataagg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 931
Length adjustment: 10
Effective length of query: 517
Effective length of database: 921
Effective search space: 476157
Effective search space used: 476157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_c01.g1 MSMg01no353_c01.g1 CHROMAT_FILE:
MSMg01no353_c01.g1 PHD_FILE: MSMg01no353_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
(484 letters)
>mm_chr14_11786184_11787067
Length = 884
Score = 897 bits (464), Expect = 0.0
Identities = 479/484 (98%)
Strand = Plus / Minus
Query: 1 aattgaccatattttggttgcaaagatctttattcagtagctcaagagtcctgcatctag 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattgaccatattttgattgcaaagatctttattcagtagctcaagagtcctgcatctag 625
Query: 61 attcatgaaaaggatgtttctcattgcactcgcctgctatgagcagctgagctgttagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attcatgaaaaggatgtttctcattgcactcgcctgctatgagcagctgagctgttagtt 565
Query: 121 cccagtgaccgggcatgccttgatttactgtgcggttgatttaattcactgaaggtgacc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 cccagtgaccgggcatgccttgatttactgcgcggttgatttaattcactgaaggtgacc 505
Query: 181 ttgctgcagttttctgcctgaactgtggcaggaacacagttggtggtggtccccagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgctgcagttttctgcctgaactgtggcaggaacacagttggtggtggtccccagggaa 445
Query: 241 taaactgctgcaggtgacagctctcagtctttttaggaccatgagttggctataactctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaactgctgcaggtgacagctctcagtctttttaggaccatgagttggctataactctc 385
Query: 301 acggggctgtcttcacacacactggccttggggcttatgatgacatttttatacacaggc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acggggctgtcttcacacatactggccttggggcttatgatgacatttttatacacaggc 325
Query: 361 tatggtgacctgcagttcatggggctgtagctgaattacctggaagataagaacattctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 tatggtgacctgcagttcatggggctgtagctgaattacctggaagataagaatattctc 265
Query: 421 ccttggtaaagtatgtccttgtttccaggagctctgataaataacccttacatgtacctg 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 ccttggtaaagtatgtccttgtttccaggagctctgagaaataacccttacatgtacctg 205
Query: 481 catc 484
||||
Sbjct: 204 catc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
