BAC Information

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BAC

Clone NameMSMg01-353H12
Chromosome14 (Build37)
Map Location 81,211,322 - 81,211,524
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H12.T7 (MSMg01no353_h12.b1)MSMg01-353H12.TJ (MSMg01no353_h12.g1)
ACCAG464338AG464339
length770768
length of high quality
(start - end)
400 (49 - 448)211 (327 - 537)
definitionCHROMAT_FILE: MSMg01no353_h12.b1 PHD_FILE: MSMg01no353_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:21 2005CHROMAT_FILE: MSMg01no353_h12.g1 PHD_FILE: MSMg01no353_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGGATTTCGTACAGTCAAGGACAGCACAAGAAAACCTACAG
AGTCAACCAACCTGGGCTTATAGGACTCACAGAGAATGAACAAACAACCA
GAGAGCCTGCATAGGCCTGATCTTAATGCCAGAAAACATACATTAGAGTC
ATGTAGAGTGGTATTCCTATGGGACTCCTAAATGTGGGAACAAAGGCTGT
CTCTCACTCTTTTGTCTGCTGTTAGGGACTCTTTCTTCCTATTGAGATGC
CTAGTCCAGCCTTAATATGAAGGAAGGTGCCTAGTCTTACTCTAACTTGA
TATGCAATATTTGGTTAATATCCATGGGAGGTCTGCACTTTTCTGAAGAG
AAATGGAGGAAGAGTGGATTATGTGGTAGAGGGAGGAAGAGGGAAGGTCT
NNCGCGCCTCTACTGCACGACTGTATGGTATACTGAACTTAACACCATGT
GAGCGCTAGGTCTACATATAGCCCAGAACCGCAACGAGAACACGTTGGAT
CCGCTTTTTCTTTCGTCTTTGCCCCCTGACTTATCCCCTTTAACCCTTAG
ACCCATCCCTATCGGTATATATCCTGCCCACTTTTGCGTTCCCCGCTCTT
TTCCCCTCGCACCCTATTTCATGGTATATACCCCCCTCTACACTTGTCCC
CTATACCCACACCTTTCCCCCTTTTCCCCCTCCCTTTAACCCCGTCCTCC
CCCCCCTCCCCTTTTCTCCC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGGATTTTAGACATACTTGTATGCATACTATACC
AGGAAATCTCCTCATCTCTCTCTATCTCCTTTTTAAAATCCTGACATTCA
CATAACCTTTCAGGGATCAATCAGGGATAGCTCTATGTAAAGGTGGATAG
CTTTAGCTTTATGTTGTCAAATTCAACTTTGTGAAATTTTTTTTTCTTGA
AAACTATTATTTATCTTATGATTATGGAAGCTCTACTCTACCAACTGTGT
TTTATATATATAGACGGTTTTCTTGCCTCCTTTTAGCGTGATACCCTTTA
AAACCTGACTAAGCTTTTTCCCACACCATATCTAAAAGATAAATTTTTTA
ATTTTCTCCCATTGATGGAAAAATGCCTTACTCTTCCTAGGCTTCCCTTT
TTCCAAAGTTTTCCACTTCCTTATCCGCGTCGAACTCTGTGTTACAAACC
GTTTCTCCCCCTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h12.g1 MSMg01no353_h12.g1 CHROMAT_FILE:
MSMg01no353_h12.g1 PHD_FILE: MSMg01no353_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:21 2005
         (211 letters)



>mm_chr14_81211122_81211732
          Length = 611

 Score =  350 bits (181), Expect = e-101
 Identities = 200/211 (94%), Gaps = 8/211 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatacttgtatgcatactataccaggaaatctcctcatctctctctatctcctttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatacttgtatgcatactataccaggaaatctcctcatctctctctatctcctttttaa 260

                                                                       
Query: 61  aatcctgacattcacataacctttcagggatcaatcagggatagctctatgtaaaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 261 aatcctgacattcacataacctttcagggatcaatcagggatagctctatgtaaaggt-- 318

                                                                       
Query: 121 atagctttagctttatgttgtcaaattcaactttgtgaaatttttttttcttgaaaacta 180
                 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ------ttacctttatgttgtcaaattcaactttgtgaaatttttttttcttgaaaacta 372

                                          
Query: 181 ttatttatcttatgattatggaagctctact 211
           ||||||||||||||| |||| ||||||||||
Sbjct: 373 ttatttatcttatgactatgaaagctctact 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)