BAC Information

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BAC

Clone NameMSMg01-353H24
Chromosome14 (Build37)
Map Location 47,434,771 - 47,644,209
singlet/doubletdoublet
Overlap geneGmfb, Cgrrf1, Samd4
Upstream geneLOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H24.T7 (MSMg01no353_h24.b1)MSMg01-353H24.TJ (MSMg01no353_h24.g1)
ACCAG464362AG464363
length805805
length of high quality
(start - end)		472 (49 - 520)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no353_h24.b1 PHD_FILE: MSMg01no353_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:23 2005CHROMAT_FILE: MSMg01no353_h24.g1 PHD_FILE: MSMg01no353_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:23 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(47,434,771 - 47,435,238)(47,643,863 - 47,644,209)
sequence
NNNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACAAAATAGGCTCCAAAAGCAAATTATAATATCTTGCAGTC
TCTCAAGAAGAAACTTGTTAAAAATACAAGTATAATATGGACTTTTTTCT
TTCTCAGTTTTTACTGTATGCACATTATTAGAACAAAGAGAATTGTTTGT
TTTTTCTTAAAAAATCCAGTCAAGACATCAACTTTCATACTTTTGTCTAA
TACATGCATACATGTTTTAATTTGGATGTGGTCAAGATGAGAAAGGACTA
CTTTTAAGATATGTTCTTATTCTTGTATTAGCTTCTTAGTCAGCATAATG
AAGTCATGGGTTTCATGTATATTCTCAATACTTTGCTCATAGTCACCCCT
CCACACCCCCTTCACTGTTCCCTCTCTCCTCCCAAACAGTCCCCAATTCT
GTTTTCATGCCTTATAAAATATATCTTTTGAAAGTTTAACAAACAGGTTC
ATACATAAAATCCTGATAACGAACGAAAATCTCCAAACCACTTTATAAAA
GGATATCGAGGTTGCCGCTCCGGGTAATTCCGCCTTTAAGTTCTTCCGGA
GAAACACCCTTGGGCCCAATAAAAAAAAAAAATCCTGAAGAAAGCATGTC
CCTTACCCAAGGGCCATTGGCCCCCCTTTTGCTAAAAATAAGGGTACTTA
ATACATTAACTCCAAATTTCAAAACACCGGGTTTATGAAGCGCAGGGGCT
CTTTTATGCCTTCCCTTCCAAGGCGCACGAAAAACAGCGTGTCTGTTATA
ACACG

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGTCAGAGTTACACAGGG
AGACCCTGTCTCAAAACAAACAAGCATCAAATACCATAAAGCCCCATGAG
GCTAGTACTAGGTAGGCCTGGTGACCCATGCCTCTAATCCCAGGGTTCAG
GCAAGAACATCACAAGTTCAAATGCAGCCTAGACAACTTAGGAGACTCTG
CCTCAAAACTAAAGTAAAGAAAGAGCAAGACATGAAGTTAAGTGCTGGCA
TGAGGCCCGAGGTTCAGTCACTAGCCTTTCCCTCCTGAAGACAGGAATCA
AGTACTACTGTAATGTGAACTGGAACAATTCCATGCCGCTTGTTGTTTCA
TCGCTGTTTTTTGATTGTTGGTTTGGCTTGATTTTGCCAGTCCAAGTTTA
CGTTCTCCCGTCAAGAGCATAACGGACCATACCCTCTGGTGCCCGTGACG
CTATGTTCAGCCTGTTTCTTTTCCTTTGTATGCTCCTCCTGTCTTCCTCT
TCCCCCTTTTTTTGCCCGTTTTCCGCCTTTTTGTCCCCTTCCCTTCTTTT
CTTACACGTTCCCTCCCTTGTTTTCGCTTTTTCCCTTTTCCCTTATTTGT
TCCTTTTCTTTTCCCGCTTCCCTTTCCCTTTTTTTCCTCCCTTTTTCCCT
TTTTTCCCCCTTTTCTTTCCCCCTTTTTCCCCTTTTTTTTCGTTTTCTTT
ATCCGCCTTCTTTTCCCCCTTTTTTCCTTTCCCTATTTTTCCCCCCTTCT
TTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h24.b1 MSMg01no353_h24.b1 CHROMAT_FILE:
MSMg01no353_h24.b1 PHD_FILE: MSMg01no353_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:23 2005
         (472 letters)



>mm_chr14_47434567_47435438
          Length = 872

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacaaaataggctccaaaagcaaattataatatcttgcagtctctcaagaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacaaaataggctccaaaagcaaattataatatcttgcagtctctcaagaagaa 264

                                                                       
Query: 65  acttgttaaaaatacaagtataatatggacttttttctttctcagtttttactgtatgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttgttaaaaatacaagtataatatggacttttttctttctcagtttttactgtatgca 324

                                                                       
Query: 125 cattattagaacaaagagaattgtttgttttttcttaaaaaatccagtcaagacatcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattattagaacaaagagaattgtttgttttttcttaaaaaatccagtcaagacatcaac 384

                                                                       
Query: 185 tttcatacttttgtctaatacatgcatacatgttttaatttggatgtggtcaagatgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcatacttttgtctaatacatgcatacatgttttaatttggatgtggtcaagatgaga 444

                                                                       
Query: 245 aaggactacttttaagatatgttcttattcttgtattagcttcttagtcagcataatgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggactacttttaagatatgttcttattcttgtattagcttcttagtcagcataatgaa 504

                                                                       
Query: 305 gtcatgggtttcatgtatattctcaatactttgctcatagtcacccctccacaccccctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcatgggtttcatgtatattctcaatactttgctcatagtcacccctccacaccccctt 564

                                                                       
Query: 365 cactgttccctctctcctcccaaacagtccccaattctgttttcatgccttataaaatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactgttccctctctcctcccaaacagtccccaattctgttttcatgccttataaaatat 624

                                                           
Query: 425 atcttttgaaagtttaacaaacaggttcatacataaaatcctgataac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcttttgaaagtttaacaaacaggttcatacataaaatcctgataac 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_h24.g1 MSMg01no353_h24.g1 CHROMAT_FILE:
MSMg01no353_h24.g1 PHD_FILE: MSMg01no353_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:23 2005
         (347 letters)



>mm_chr14_47643481_47644227
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctagtcagagttacacagggagaccctgtctcaaaacaaacaagcatcaaatacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 caggctagtcagagttacacagggagaccctgtctcaaaacaaacaagcatcaaatacca 670

                                                                       
Query: 61  taaagccccatgaggctagtactaggtaggcctggtgacccatgcctctaatcccagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taaagccccatgaggctagtactaggtaggcctggtgacccatgcctctaatcccagggt 610

                                                                       
Query: 121 tcaggcaagaacatcacaagttcaaatgcagcctagacaacttaggagactctgcctcaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcaggcaagcacatcacaagttcaaatgcagcctagacaacttaggagactctgcctcaa 550

                                                                       
Query: 181 aactaaagtaaagaaagagcaagacatgaagttaagtgctggcatgaggcccgaggttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aactaaagtaaagaaagagcaagacatgaagttaagtgctggcatgaggcccgaggttca 490

                                                                       
Query: 241 gtcactagcctttccctcctgaagacaggaatcaagtactactgtaatgtgaactggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtcactagcctttccctcctgaagacaggaatcaagtactactgtaatgtgaactggaac 430

                                                          
Query: 301 aattccatgccgcttgttgtttcatcgctgttttttgattgttggtt 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aattccatgccgcttgttgtttcatcgctgttttttgattgttggtt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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