BAC Information

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BAC

Clone NameMSMg01-353I04
Chromosome14 (Build37)
Map Location 50,072,303 - 50,263,033
singlet/doubletdoublet
Overlap geneSlc35f4
Upstream gene6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353I04.T7 (MSMg01no353_i04.b1)MSMg01-353I04.TJ (MSMg01no353_i04.g1)
ACCAG464369AG464370
length747758
length of high quality
(start - end)		607 (51 - 657)518 (81 - 598)
definitionCHROMAT_FILE: MSMg01no353_i04.b1 PHD_FILE: MSMg01no353_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:24 2005CHROMAT_FILE: MSMg01no353_i04.g1 PHD_FILE: MSMg01no353_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,262,526 - 50,263,033)(50,072,303 - 50,072,820)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTGTTGCCTTTGAAAACCTCAAATGTCTTCCAAAGAC
TCCTGTTATTAAGGTTGATAACTCCGACTTAATTAAATAAGAAGCAACTT
GAATTATTTGGGACTTATAATATTTAACTCTATATTGACTACAGGTGAGT
GACTATGGAGCTATATTCATTTCTTCTCTTGCTTTTACCCCCTTATTAGC
TTCCCCATCCCTTCTGTCTGCCTCTTATGTGTTTGGAATTGGACCCCTAA
CCATATGCATGCTAGGGAAGCTCTCTACTACTGAGCCCCATCCTTATCCT
GGAAATGTGTTTCCTTACTTCTCCCAGTACTTCAGATCCCTCTCTGGGAG
ATGATCATGATAAAATATTCTTAAGGAATTGTTGTGGGGAATCACCTTAG
AACATACACAGAATCACAGAATGACATTTGGTACATAACTATCACCACCA
CACCCAGAAAGATTCTATGGTTGGAGTGGGGGAAAATACAAGTTATAAAG
GAAAATATACTCAAAACTATTTTGAATATGTTTTATGGTATATTAACTTT
TCCAGAAATGACCTGAGAAAAAGTTCCTTCAGTGTANGCAGGGCACCAGC
CATAGACCTGTGCAGACATTCTGTCCAAGTCTAGCTTGATGAGCCAGTGA
ACGTACAGGGTTGCTTCTAGAATATGGTTGAACGATTACTTACCAGG

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATATCAACCAAGACGCAG
TTTCATGATTCAATCTGAAATTAAAGTCACCAGCAGCCACCTTCAAACCC
AGCAAACCAGAAGTTACTAGATGGAGAAGATGAAATTTTATCCTTTTGAT
TAAAAAAAAGTACAGGAATATATGGGTTCAATTTCTAAACAGAATGAAAT
GAATGAAGTGATGCTTAAATTAAAATATGAACACATTTCCAGAGTAAAGT
TATGCATAATTAAACGATTTCATCATTTGAATGTTTTAAGTTTTCATTTC
TAGAGAATAAGAAGTCTCTACCCTGTGCTTCAGGCTTCATAACTAACAGT
CACTGCTTGTTTTCATTGAGCTCAGGAAACTTCATTGTCTCAGCTAAAGA
AGAAACTGTTAATTCTCTGTGCACCATCATTCTTATAGGACATCTTTACA
GCTGGAGTCAGAAACAAGAGTGTTACTAGATACCATTAAAACAACAACAA
CAACAAAAACAAAAAACAAAAAACCCAAAACAACAACACATTTTCCATCT
GTGTCTCTTGCTTCAGNTTGGCACATAATATGTCAAACTTGGGAGCAAAA
GCATTATTAACAGAGTGAATGANATACTAAGTATCCACAAAGGCCTCGGG
AGCTCCTTAAGGCAGCTATACCCCAACGAATTTATTTGGGATTCCCCCCC
CCCCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_i04.b1 MSMg01no353_i04.b1 CHROMAT_FILE:
MSMg01no353_i04.b1 PHD_FILE: MSMg01no353_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:24 2005
         (607 letters)



>mm_chr14_50262027_50263033
          Length = 1007

 Score =  961 bits (497), Expect = 0.0
 Identities = 505/508 (99%)
 Strand = Plus / Minus

                                                                        
Query: 100  tgaattatttgggacttataatatttaactctatattgactacaggtgagtgactatgga 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 tgaattatttgggacttataatatttaactctatattgactacaggtgagtgactatgga 948

                                                                        
Query: 160  gctatattcatttcttctcttgcttttacccccttattagcttccccatcccttctgtct 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  gctatattcatttcttctcttgcttttacccccttattagcttccccatcccttctgtct 888

                                                                        
Query: 220  gcctcttatgtgtttggaattggacccctaaccatatgcatgctagggaagctctctact 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  gcctcttatgtgtttggaattggacccctaaccatatgcatgctagggaagctctctact 828

                                                                        
Query: 280  actgagccccatccttatcctggaaatgtgtttccttacttctcccagtacttcagatcc 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  actgagccccatccttatcctggaaatgtgtttccttacttctcccagtacttcagatcc 768

                                                                        
Query: 340  ctctctgggagatgatcatgataaaatattcttaaggaattgttgtggggaatcacctta 399
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 767  ctctctgggagatgatcatgataacatattcttaaggaattgttgtggggaatcacctta 708

                                                                        
Query: 400  gaacatacacagaatcacagaatgacatttggtacataactatcaccaccacacccagaa 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  gaacatacacagaatcacagaatgacatttggtacataactatcaccaccacacccagaa 648

                                                                        
Query: 460  agattctatggttggagtgggggaaaatacaagttataaaggaaaatatactcaaaacta 519
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 647  agattctatggttggagtgggggaaaatacaagttataaaggaaaaaatactcaaaacta 588

                                                                        
Query: 520  ttttgaatatgttttatggtatattaacttttccagaaatgacctgagaaaaagttcctt 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  ttttgaatatgttttatggtatattaacttttccagaaatgacctgagaaaaagttcctt 528

                                        
Query: 580  cagtgtangcagggcaccagccatagac 607
            ||||||| ||||||||||||||||||||
Sbjct: 527  cagtgtaggcagggcaccagccatagac 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_i04.g1 MSMg01no353_i04.g1 CHROMAT_FILE:
MSMg01no353_i04.g1 PHD_FILE: MSMg01no353_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:24 2005
         (518 letters)



>mm_chr14_50072103_50073020
          Length = 918

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatcaaccaagacgcagtttcatgattcaatctgaaattaaagtcaccagcagccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatatcaaccaagacgcagtttcatgattcaatctgaaattaaagtcaccagcagccac 260

                                                                       
Query: 61  cttcaaacccagcaaaccagaagttactagatggagaagatgaaattttatccttttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaaacccagcaaaccagaagttactagatggagaagatgaaattttatccttttgat 320

                                                                       
Query: 121 taaaaaaaagtacaggaatatatgggttcaatttctaaacagaatgaaatgaatgaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaaaagtacaggaatatatgggttcaatttctaaacagaatgaaatgaatgaagtg 380

                                                                       
Query: 181 atgcttaaattaaaatatgaacacatttccagagtaaagttatgcataattaaacgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttaaattaaaatatgaacacatttccagagtaaagttatgcataattaaacgattt 440

                                                                       
Query: 241 catcatttgaatgttttaagttttcatttctagagaataagaagtctctaccctgtgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcatttgaatgttttaagttttcatttctagagaataagaagtctctaccctgtgctt 500

                                                                       
Query: 301 caggcttcataactaacagtcactgcttgttttcattgagctcaggaaacttcattgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcttcataactaacagtcactgcttgttttcattgagctcaggaaacttcattgtct 560

                                                                       
Query: 361 cagctaaagaagaaactgttaattctctgtgcaccatcattcttataggacatctttaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctaaagaagaaactgttaattctctgtgcaccatcattcttataggacatctttaca 620

                                                                       
Query: 421 gctggagtcagaaacaagagtgttactagataccattaaaacaacaacaacaacaaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggagtcagaaacaagagtgttactagataccattaaaacaacaacaacaacaaaaac 680

                                                 
Query: 481 aaaaaacaaaaaacccaaaacaacaacacattttccat 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaaacaaaaaacccaaaacaacaacacattttccat 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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