BAC Information

Click to search

BAC

Clone NameMSMg01-353J03
Chromosome14 (Build37)
Map Location 47,778,615 - 47,919,040
singlet/doubletdoublet
Overlap geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
Downstream geneLgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J03.T7 (MSMg01no353_j03.b1)MSMg01-353J03.TJ (MSMg01no353_j03.g1)
ACCAG464415AG464416
length755750
length of high quality
(start - end)		596 (52 - 647)479 (78 - 556)
definitionCHROMAT_FILE: MSMg01no353_j03.b1 PHD_FILE: MSMg01no353_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:29 2005CHROMAT_FILE: MSMg01no353_j03.g1 PHD_FILE: MSMg01no353_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,778,615 - 47,779,206)(47,918,562 - 47,919,040)
sequence
NNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCAAAGCCTCGTGAGACAGTGAGCTTGTAGCTGGAAAG
GTGGGTGTGTGGCCAGGGGAGATGGCCTTTGGAAGCATTCAAGCAGAGAG
CACACCTCAGCTCTGCTCCCATGCCCCTAAAGAGAAACTGGGAGAACTAA
TGGGCCCCGAGTGTAGAGCTCACTTAGGGCAAACATAACGACGGGGGAAT
AACAAATCTTGACGCCCCCAGTCATCAATTCAAGCTGAGTCTCAGGCACT
CTAATTAATCATATTGTTTTATCAGAGCTTAAAGTTCAAGTTAAAAATAA
AAAGGCTATTTGTTAATTAATAGTAGGTCAACTACTGAACCAGCTAAATC
TATTAGAGTAATCAGATTAGAGAAGATTAGATTTCTTCAGGCCTTTCTTC
ACAAAGGGTTTATATAAGTATTTCACAGGATTAATGCTCTCCCAAATAAG
AGGCTCCTGGCCTTGCAGTGAAACCTGCCAGGTGGTAGTATGGACAACCT
GTGTGAGGGCAGCAATTGGCATGACAGAATATTTCTTTAAAACATTACTG
TCTGCTCACGATTTGGACTCCATTAAGAGTCACTTCTTCTATGAGACAGT
TTAGAACATACACAACTATACACACCTCTGGTAGAGTGCTCCATCTTAGN
TAACATGCACTATCAGTTGCGCAGCATCATCGCTCTGACCACCCAATCTG
TAAAC

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGGTTCCTGAGCCCAACGCT
CAACCTCTGTAGGGAGAATGAAGATGACACCGATTCCTTCTGTAATCAAA
AAGAACATTCCAACCTCGGCAGCTGCAGGAAAAAGTTTTTGAAGGGAAGT
GTTCTAGAGAGTGGCTCCAATACTCCACGACTAAAAACTGCCCTCCTCCC
CACCCAAGGAGCGCCACTAACAAAGACTTCCGAGGGCGACTCCAGCTTCT
GAGGGTTTGGCCTCCAAACAGGCCTTTCGCACATGGGGGAGGGGGCAACA
CGTGTGTGTTTCTGTAGTAGGCTGTTACACATCTACGGTGGGGTCTGGTT
TAGATACTTCAACTTTAGGATTCGTGAAAACATTACTTTCAGTTTTCATG
GCAGGGAGGAAAAAAAATGGTTCAAGCGTTCTAGCTAGCTCAAAGGAGAA
CGTCACTCACTCAGCCCATGGCACCTTCTGTCCCCCGTAGTCATTTAAAG
AATGGGTAATTACGATCAGCGAGAAACTTGTCACACAGAATTATCAGGTG
CCATATCTTGTTGTAATGATTCGGGTCTCCCCCTCTGCTGGTTTTATAAC
AAATAACTGGCTGGGACACGTTGGCAGGGTATTGCCATCTTGCCGTTTTC
CCTTTTCTATTTTCTCCTTCCCATTCGTTTTTTTTTTTTTCCCCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j03.b1 MSMg01no353_j03.b1 CHROMAT_FILE:
MSMg01no353_j03.b1 PHD_FILE: MSMg01no353_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
         (596 letters)



>mm_chr14_47778411_47779406
          Length = 996

 Score = 1122 bits (580), Expect = 0.0
 Identities = 589/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcaaagcctcgtgagacagtgagcttgtagctggaaaggtgggtgtgtggcca 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaagcctcgtgagacaatgagcttgtagctggaaaggtgggtgtgtggcca 264

                                                                       
Query: 65  ggggagatggcctttggaagcattcaagcagagagcacacctcagctctgctcccatgcc 124
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ggggaaatggcctttggaagcattcaagcagagaacacacctcagctctgctcccatgcc 324

                                                                       
Query: 125 cctaaagagaaactgggagaactaatgggccccgagtgtagagctcacttagggcaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctaaagagaaactgggagaactaatgggccccgagtgtagagctcacttagggcaaaca 384

                                                                       
Query: 185 taacgacgggggaataacaaatcttgacgcccccagtcatcaattcaagctgagtctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taacgacgggggaataacaaatcttgacgcccccagtcatcaattcaagctgagtctcag 444

                                                                       
Query: 245 gcactctaattaatcatattgttttatcagagcttaaagttcaagttaaaaataaaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcactctaattaatcatattgttttatcagagcttaaagttcaagttaaaaataaaaagg 504

                                                                       
Query: 305 ctatttgttaattaatagtaggtcaactactgaaccagctaaatctattagagtaatcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctatttgttaattaatagtaggtcaactactgaaccagctaaatctattagagtaatcag 564

                                                                       
Query: 365 attagagaagattagatttcttcaggcctttcttcacaaagggtttatataagtatttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attagagaagattagatttcttcaggcctttcttcacaaagggtttatataagtatttca 624

                                                                       
Query: 425 caggattaatgctctcccaaataagaggctcctggccttgcagtgaaacctgccaggtgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caggattaatgctctcccaaataagaggctcctggccttgcagtgaaacctgccaggtgg 684

                                                                       
Query: 485 tagtatggacaacctgtgtgagggcagcaattggcatgacagaatatttctttaaaacat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtatggacaacctgtgtgagggcagcaattggcatgacagaatatttctttaaaacat 744

                                                               
Query: 545 tactgtctgctcacgatttggactccattaagagtcacttcttctatgagac 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tactgtctgctcacgatttggactccattaagagtcacttcttctatgagac 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_j03.g1 MSMg01no353_j03.g1 CHROMAT_FILE:
MSMg01no353_j03.g1 PHD_FILE: MSMg01no353_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
         (479 letters)



>mm_chr14_47918362_47919240
          Length = 879

 Score =  926 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaggttcctgagcccaacgctcaacctctgtagggagaatgaagatgacaccgattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaaggttcctgagcccaacgctcaacctctgtagggagaatgaagatgacaccgattcc 620

                                                                       
Query: 61  ttctgtaatcaaaaagaacattccaacctcggcagctgcaggaaaaagtttttgaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttctgtaatcaaaaagaacattccaacctcggcagctgcaggaaaaagtttttgaaggga 560

                                                                       
Query: 121 agtgttctagagagtggctccaatactccacgactaaaaactgccctcctccccacccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtgttctagagagtggctccaatactccacgactaaaaactgccctcctccccacccaa 500

                                                                       
Query: 181 ggagcgccactaacaaagacttccgagggcgactccagcttctgagggtttggcctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggagcgccactaacaaagacttccgagggcgactccagcttctgagggtttggcctccaa 440

                                                                       
Query: 241 acaggcctttcgcacatgggggagggggcaacacgtgtgtgtttctgtagtaggctgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaggcctttcgcacatgggggagggggcaacacgtgtgtgtttctgtagtaggctgtta 380

                                                                       
Query: 301 cacatctacggtggggtctggtttagatacttcaactttaggattcgtgaaaacattact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacatctacggtggggtctggtttagatacttcaactttaggattcgtgaaaacattact 320

                                                                       
Query: 361 ttcagttttcatggcagggaggaaaaaaaatggttcaagcgttctagctagctcaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcagttttcatggcagggaggaaaaaaaatggttcaagcgttctagctagctcaaagga 260

                                                                      
Query: 421 gaacgtcactcactcagcccatggcaccttctgtcccccgtagtcatttaaagaatggg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaacgtcactcactcagcccatggcaccttctgtcccccgtagtcatttaaagaatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |