BAC Information

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BAC

Clone NameMSMg01-354D12
Chromosome14 (Build37)
Map Location 35,316,269 - 35,316,506
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
Downstream gene9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D12.T7 (MSMg01no354_d12.b1)MSMg01-354D12.TJ (MSMg01no354_d12.g1)
ACCAG464902AG464903
length788793
length of high quality
(start - end)
64 (65 - 128)238 (82 - 319)
definitionCHROMAT_FILE: MSMg01no354_d12.b1 PHD_FILE: MSMg01no354_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:18 2005CHROMAT_FILE: MSMg01no354_d12.g1 PHD_FILE: MSMg01no354_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCXXXXXXXXXXXX
XXXXXXXXXATTCCCTCTGCTGCTTTTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTTGAGNACAACAACCCAAAAAACAC
CCTTTAAACCACCACTCTTTTATTACTGAACCATAATATCTCACCTATAA
CACTCCTTCTAACTGCATTCTATTTATTAAATCTTTGTAACTATCTTTTA
TTTTTTTCTTATAAATCAATTACTTTTTATCACTCTGACTAACACAACAA
AGCAGCCTATACTTATTTTTTTTTACACTCTCAACTACACTCAAATACCC
TCTTAATTCTATATTTTCCTTTCCAATCATGTGTAGCATTTGCGTTCTTA
ATTTCTTTCTTCAGCTACTTTATTGCCCTTACCAATCCATACTATTACTA
TACCCTCTATATTTTTTAAACATCATGACAATATTTCACACTACTTGACC
TATAACATTTTTCGTTCCCCTGTTTACCACTTTTTTCCCATTTACTTATC
ACGCCTTCTCCATCACATCTTTTTTTTCACTCCTATTATTTCCCTTCTCT
TCACCCCAAATATAATACTTATACTTTTATCACCACCCCCCTATTTTCCT
TCTTTTTCCCCCCCTCTTATTATTCAACCTTTTTCACCACTATATTTTTT
CAATTTCCCATCACCACTTTTTTATTTTACCACTTCTCCTCATTATTTTC
CACCATTCTCCTTTACCACCCCTTTATACTTTCACAAC
NNCTCGATGCTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCCGCGGATCACAAG
CCACCCCAGCGGCGGGGCCTCCGGGCCGAAACCAGGCTTTCGCTACGTGA
TCCGGAGAACGCGTGCACCTCCACGTTCCTCCCGGCGGGCCAGAACCAGA
GAGCACCGGGGGACGGGGAAGGGAGGGGGTGAGTAATGAATGCAGTGTGC
CTTACATCTTTCTTTGCAACCACAACTATGAGACGGGGAATCGATCTCGT
AGCGGGAGCCTCGGTGCCCTCGGATTTTTTCGGGCCGCTTCTCCCGTGGA
GCCCGAGCTCCGGCTCTAGAAGGAGTGTGCCCGCATCGTCCACTTCACGC
AGTTTTGTCCCAGTGGGCCCCTCCATCACGCGTGTTTTGTTTGTGGCGTC
GTGTTCTTGATGGGTGTTCCTCCTCTTTTCTGTAACACTTGTTATCCTTT
TATTTTTGTTTGTATCTTCTTTCTTTTCTTATTAGCCCTTTATTTCTTTG
ACTCCGCTTTTGCTACTCTCGTCATTTCTGTATTGTCTTTTTTTTTTTTT
CTCCTCTTTTTTTTTTACTATCTTACTCTCCTTTTGTTTTTATCTCTCTT
CTTTTTTCTATCCATTTCCCCCTTCTTTTTTTGCTCGTACACACTAATTC
ATCTTTTTTTATCCAGTACTTTATTTTTTTTCTTTTTTTATCCTTTTTTT
TATTCTTTTGTTTCTCCTAATATTTCCGTTACCTTGAACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d12.g1 MSMg01no354_d12.g1 CHROMAT_FILE:
MSMg01no354_d12.g1 PHD_FILE: MSMg01no354_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:18 2005
         (238 letters)



>mm_chr14_35316069_35316706
          Length = 638

 Score =  406 bits (210), Expect = e-118
 Identities = 231/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcccgcggatcacaagccaccccagcggcggggcctccgggccgaaaccaggctttc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 438 caggcccgcggatcacaagccaccccagcggcggggcccccgggccgaaaccaggctttc 379

                                                                       
Query: 61  gctacgtgatccggagaacgcgtgcacctccacgttcctcccggcgggccagaaccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gctacgtgatccggagaacgcgtgcacctccacgttcctcccggcgggccagaaccagag 319

                                                                       
Query: 121 agcaccgggggacggggaagggagggggtgagtaatgaatgcagtgtgccttacatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcaccgggggacggggaagggagggggtgagtaatgaatgcagtgtgccttacatcttt 259

                                                                     
Query: 181 ctttgcaaccacaactatgagacggggaatcgatctcgtagcgggagcctcggtgccc 238
           ||||||||||||||||| |||||||| || ||||| || | |||||||||||||||||
Sbjct: 258 ctttgcaaccacaactacgagacgggcaaccgatcccgcaccgggagcctcggtgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)