BAC Information

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BAC

Clone NameMSMg01-356D06
Chromosome14 (Build37)
Map Location 51,655,640 - 51,656,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10
Downstream geneRnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356D06.T7 (MSMg01no356_d06.b1)MSMg01-356D06.TJ (MSMg01no356_d06.g1)
ACCAG466403AG466404
length747796
length of high quality
(start - end)		532 (42 - 573)366 (77 - 442)
definitionCHROMAT_FILE: MSMg01no356_d06.b1 PHD_FILE: MSMg01no356_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:51 2005CHROMAT_FILE: MSMg01no356_d06.g1 PHD_FILE: MSMg01no356_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGAGACTTACTTTCATGTACCCCGTGTGGGCCTCAAAGTAATTGTAT
AATTAAAAATACCCATCAGTTTCTGATCCTCTTACTCCTACCTGCTCTGT
ACTAGGATAACAGGCATGTGTCACCACTCCCAGTTTTAAGCAGTGCTGGC
AACCGAACCCAGAGTTTTTTGCGTGCTCGTCTAGTACTCTTCTAAGCTCT
ATACATTCTTAGCCCTTAAGAGATATATCCTAAAGACAGAAAATCGTATT
AGAACAAACTGCATTATCCTTTTCTTGATCGTGAGTTGTTTGACTAAGAA
GTGACTATGAATATCTTTAAACAAAAAAGGGGACAGGGAAGGAAGCTTTT
ACTTGAGGTTTTGTTGCTGTGGTTGCTGGAGACAGTCTCATTACGTAGAT
CCATTGGCATGCAACCCACTAAGCAGACCAGCCCCTGCTCACAGGTCCAC
CTGCCATTGCCTCCTGAGTACTTTGACTAAAGCCAAGCACCACCACATCC
AGTCTTTGTTATTTTAAAGTTTTTGTGGGTTGAATATCAAATCTGGAGCA
TCATACTTGCCCAGAAAACATTTATCCACTGAGACAAATTTCATCCCTGA
CTCCTTNATTGTAACCTAGTCTTACAATGAAAAAATGACCAAGTACATGT
AAATGTTCCTGACCTCTTATTTAAAAATGTAAAATATTCCATGAAAN

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGACTTCTTTATA
TGTATTGGATATGAGTCCCCTATCTGATTTAGGATAGGTAAAGATTCTTG
CCCAATCTGTTGGTGGCCTTTTTGACTTATTGAGTGTGTCTTTTGCCTTG
CAGAGGCTTTGCGATTTTATGAGGTCCCATTTGTTGATTCTCGATCTTAC
AGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATGT
CTTTGAGGCTTTTCCCTACTTTGTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTATTACTAGGAGA
TAGGAATGGATCAATTCGCATTCTTCTACATAATAACCGCCAGTTGTGCC
AGCTCCATTTATTGAAAATGCTGTCTTTTTTCCACTGCGATGGTTTTGTT
CCCTTGTTTTAGTTTCCGGGTCTCCTTGGGCGTTGCCCCCACCATCTTTC
CATTTCCATTCTTATCCATCCTGGTTCTTCCATGTTTTGACGCTCCTTCT
ATTCTAAATTTTTTACCCCTTTACCTCTCTTTCATTGTTTTCCTTTATTT
TCTTCCCCATTCCCTTTTTCCCACTTTACCCTTGTTATTCCCTGTCATAC
CTTCCCTCTTATTTTTTCTCCCTCTTTTTCAACTTTTGTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_d06.b1 MSMg01no356_d06.b1 CHROMAT_FILE:
MSMg01no356_d06.b1 PHD_FILE: MSMg01no356_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:51 2005
         (532 letters)



>mm_chr14_51655436_51656367
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgagacttactttcatgtaccccgtgtgggcctcaaagtaattgtataatta 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgagacatagtttcatgtaccccgtgtgggcctcaaagtaattgtataatta 264

                                                                       
Query: 65  aaaatacccatcagtttctgatcctcttactcctacctgctctgtactaggataacaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatacccatcagtttctgatcctcttactcctacctgctctgtactaggataacaggc 324

                                                                       
Query: 125 atgtgtcaccactcccagttttaagcagtgctggcaaccgaacccagagttttttgcgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgtcaccactcccagttttaagcagtgctggcaaccgaacccagagttttttgcgtg 384

                                                                       
Query: 185 ctcgtctagtactcttctaagctctatacattcttagcccttaagagatatatcctaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcgtctagtactcttctaagctctatacattcttagcccttaagagatatatcctaaag 444

                                                                       
Query: 245 acagaaaatcgtattagaacaaactgcattatccttttcttgatcgtgagttgtttgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagaaaatcgtattagaacaaactgcattatccttttcttgatcgtgagttgtttgact 504

                                                                       
Query: 305 aagaagtgactatgaatatctttaaacaaaaaaggggacagggaaggaagcttttacttg 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 aagaagtgactatgaatatctttaaacaaaaaagggggcagggaaggaagcttttacttg 564

                                                                       
Query: 365 aggttttgttgctgtggttgctggagacagtctcattacgtagatccattggcatgcaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggttttgttgctgtggttgctggagacagtctcattacgtagatccattggcatgcaac 624

                                                                       
Query: 425 ccactaagcagaccagcccctgctcacaggtccacctgccattgcctcctgagtactttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccactaagcagaccagcccctgctcacaggtccacctgccattgcctcctgagtactttg 684

                                                           
Query: 485 actaaagccaagcaccaccacatccagtctttgttattttaaagtttt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actaaagccaagcaccaccacatccagtctttgttattttaaagtttt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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