BAC Information

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BAC

Clone NameMSMg01-356K07
Chromosome14 (Build37)
Map Location 63,091,276 - 63,257,016
singlet/doubletdoublet
Overlap geneLOC100042960, Ppia-ps14_723.1, LOC545062, EG629059
Upstream gene6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b, Gucy1b2
Downstream geneE130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K07.T7 (MSMg01no356_k07.b1)MSMg01-356K07.TJ (MSMg01no356_k07.g1)
ACCAG466735AG466736
length738761
length of high quality
(start - end)		277 (41 - 317)250 (70 - 319)
definitionCHROMAT_FILE: MSMg01no356_k07.b1 PHD_FILE: MSMg01no356_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005CHROMAT_FILE: MSMg01no356_k07.g1 PHD_FILE: MSMg01no356_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,091,276 - 63,091,548)(63,256,767 - 63,257,016)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGCAGATTCATTGCTTCCTCTCTACCTTAACTGTGCAGAAAGGCCTGG
TGTAATGTAGCCTGCTTTCTGGTGCAGACTGATTCCCCCTGAGGCTCTCT
GGTCCCTTTGCCATCTGCCCTTTTCCAGCCACTGGGGAGGAAAATCACCC
TCTAAGGAGATCTGTCCCAAAGAACAGCAGACACTCCCTTGCTTTCACAG
GTCCCTACGGTTATCATCACCCATGCGCCCATGGCCCTGCTGCCTCATCA
AGCAGCAGGCTTGAATTATTTATTCTACGTGGAATCTATTGTGTTGTTCC
AAACCAAACCCCATTGCATTTCCCACTTTAGTCTCTGAATCCCTGAAGGC
AATTTCCAGTGTTTTCCTACATCTCTTCAATCTGCCATCCTGCCTGGCTT
CACCTGTCCTATTGGTACCTGGGCTGTTTCTTTTCTTTTAGACTCTGTCA
TCAATTATCCACGGGAAGCCTGAGTCCTGCCAAATGAACTTCCCATGTAA
ACAGCAAAGAGAGGAGAGGGGAGTCTGATGCTCCTCAGGGCAAGGGAACG
CCCCCTCCCCAAGTTCCTTGTCCCTCCCGCTCTTTCACCCCTGCCTGTGC
CCCTCCCACCCATCATTTCCTGTTTACATGGTTATAGTCTGCTCCTGTTT
TCCTCTCCTCCTTGAAGTCTTCACACCGGAGTCCAAAA

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTGGAGACGGTGCTCTGGCAACTGGAGGC
ACACAGGACAGAATGAAAATTTAATAGCTGCCAACAGCTGAAGTAGCAAG
CCCGAATTTATGGATTTGTCAAGTGTAGTCCTCCAGAGCTCAAATCCCTC
CCAGAAACTGCCACACTGTTTAAATGGAAATGTGGTAGCGGTCCCAGGCT
CCCTAACTTTCTCATGTCATGGAAATGTGTGCATCTGCTTCTCCTGTAAC
GTTTTCAAGGCAAACCAGCTCTTTTGCAGTACATTTTTAGAGCTCCTAAC
AGGAGTGAGATGCAATGTAGGATTCCTAAGGAATTCATTAACTAGCAGAA
AAGATGTATGCTTCCAGCAGCCTGTGACAGGCATGGGGGAAGCTGGAAGG
AAGGATGAGGTAGGCAGATGGGAAGGAGAGATTAACTCTGAGATGTGTGA
ATTCTGAGGGAACTATCAGTGAGACATTTCTCCCTGGAGAGAATATGGGA
TCTGGGTCCTCTCAGACTTTATTGCTTCCTTTGCTTGGAGTACATAACGG
CTTGCTTTGTCCCTTTTTTTTATTTTCTATCCCTGTTGATTTTTTTTTGT
TTACGTTCTTCGATTCCAACTTCCTTTTCTTTCTTTAATTTTACCACATT
CACCCCAGTTTTCCACACATTCAATTAACTTTTTACTACCTCCCCCCTTT
TTACTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k07.b1 MSMg01no356_k07.b1 CHROMAT_FILE:
MSMg01no356_k07.b1 PHD_FILE: MSMg01no356_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
         (277 letters)



>mm_chr14_63091072_63091748
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggcagattcattgcttcctctctaccttaactgtgcagaaaggcctggtgta 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggcagacccattgcttcctctctaccttaactgtgcagaaaggcctggtgta 264

                                                                       
Query: 65  atgtagcctgctttctggtgcagactgattccccctgaggctctctggtccctttgccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtagcctgctttctggtgcagactgattccccctgaggctctctggtccctttgccat 324

                                                                       
Query: 125 ctgcccttttccagccactggggaggaaaatcaccctctaaggagatctgtcccaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcccttttccagccactggggaggaaaatcaccctctaaggagatctgtcccaaagaa 384

                                                                       
Query: 185 cagcagacactcccttgctttcacaggtccctacggttatcatcacccatgcgcccatgg 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 cagcagacactcccttgctttcacaggtccctatggttatcatcacccatgcgcccatgg 444

                                            
Query: 245 ccctgctgcctcatcaagcagcaggcttgaatt 277
           |||||||||||||||||||||||||||||||||
Sbjct: 445 ccctgctgcctcatcaagcagcaggcttgaatt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no356_k07.g1 MSMg01no356_k07.g1 CHROMAT_FILE:
MSMg01no356_k07.g1 PHD_FILE: MSMg01no356_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
         (250 letters)



>mm_chr14_63256567_63257216
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctggagacggtgctctggcaactggaggcacacaggacagaatgaaaatttaatagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atctggagacggtgctctggcaactggaggcacacaggacagaatgaaaatttaatagct 391

                                                                       
Query: 61  gccaacagctgaagtagcaagcccgaatttatggatttgtcaagtgtagtcctccagagc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 gccaacagctgaagtagcaagcctgaatttatggatttgtcaagtgtagtcctccagagc 331

                                                                       
Query: 121 tcaaatccctcccagaaactgccacactgtttaaatggaaatgtggtagcggtcccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcaaatccctcccagaaactgccacactgtttaaatggaaatgtggtagcggtcccaggc 271

                                                                       
Query: 181 tccctaactttctcatgtcatggaaatgtgtgcatctgcttctcctgtaacgttttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccctaactttctcatgtcatggaaatgtgtgcatctgcttctcctgtaacgttttcaag 211

                     
Query: 241 gcaaaccagc 250
           ||||| ||||
Sbjct: 210 gcaaagcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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