BAC Information

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BAC

Clone NameMSMg01-356L07
Chromosome14 (Build37)
Map Location 89,080,624 - 89,081,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356L07.T7 (MSMg01no356_l07.b1)MSMg01-356L07.TJ (MSMg01no356_l07.g1)
ACCAG466783AG466784
length754779
length of high quality
(start - end)
621 (42 - 662)457 (72 - 528)
definitionCHROMAT_FILE: MSMg01no356_l07.b1 PHD_FILE: MSMg01no356_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:30 2005CHROMAT_FILE: MSMg01no356_l07.g1 PHD_FILE: MSMg01no356_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACGGTATCTGTCATAAAACATGGCTCACTGCAGTTACATCAGCCTGCAA
GCTGAGTGGGTGCCTGTCTCTAGCCCTAGAGAAGGATATTTAATTAATGA
TATCAGATACTAATCTAGAAGTAATAAATATTCATAGTTTAACATTAAAA
AGGTAGGCAGGTTTGATTCCTGTCATTATACATCTTAAATTGTTCAGTAT
AATTTTACATAGTTCTTTTTCTAAACAGACAACTTGTAGTAATAGTATAG
ATGAGATACTTTTAAAATTATTTAATACCTTTGTGCTATTGTTCAATGAA
TTGTGAAATCTTCTAGCATATTTTTTCTCTAACATTTACTTCTGCTCTGA
ATTTGTCTTTTCACTACATTAAATAACATAATTCCTAAATTTTATGTATA
TTTAATTTAATATATAACTTCATATGTTATCTTACTCTATAAATACTTAA
AGAATATTTAATAAACTATTACTATGTATAGTTAGATATTCATATTATAC
ATGCAATGATTTATAAAATATATAAATATAAATTTACATTCTTCACAATT
TATTTTGGTTAAAATTTAAAGATATTTTATATTACAATATGAATATCTAC
CATATATTTTAAACCATCATTTAACATAATTACATTATGGAAAACAAAAG
ACAACATTATCCAGAAAGACTAATGAGGAAAAAAGTATTTCGATTCCCAG
TACN
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATATCCAGTATAAAAAAATCAGAAACAC
ACACACACACACACACACACACGGTGCGGTATAGACAGAGAAGGAAACAG
AGAGAGACAGAGAGAGAGAGAGACAGAGAGAGAGAGACAGAGACAGAGAG
AGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGAG
ACAGAGAGAGAGACAGAGAGAGACAGAGAGACAGAGAGAGACAGAGAGAG
ACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGGTTAGAGAGA
GAGGAGAGAGAGGGAAAGAGAATTAAAACAATGTAGGGGAGTGATATCAA
AAGTCTGTAATCTAATAATTGTGAGGCAGTGTCAGAGGATCAATTTAAAG
TCCATTTCACTACATAGTGAGTGTGAGGCTCCCCTATACTACATAAGTCT
CTGCATCAATAACAACAAAAATCTACTATCCAACAATAAGCTTTATTTCC
TGGAAGGGTAGGCTTTCCAGATCCAGTACCTTATTTCTATTATGGTAGGA
TGAAAATTCCTCCTTATGAAATACCAGCCCGAATTCTCTGTTACCCTTTT
TTTCCTTTATAGTGGGAGCGTTTTTCCTTGCATGAAATCCATCCTTTCAG
TTTTTTATTTCTTACCGCTGATATATGTTTTTCTCGTGGTCTTTCTTTTG
CGGCTTTTTTTTTTTTCCTTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_l07.b1 MSMg01no356_l07.b1 CHROMAT_FILE:
MSMg01no356_l07.b1 PHD_FILE: MSMg01no356_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:30 2005
         (621 letters)



>mm_chr14_89080624_89081644
          Length = 1021

 Score = 1125 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacggtatctgtcataaaacatggctcactgcagttacatcagcctgcaagctga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaattcacggtatctgtaataaaacatggctcactgcagttacatcagcctgcaagctga 535

                                                                       
Query: 65  gtgggtgcctgtctctagccctagagaaggatatttaattaatgatatcagatactaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtgggtgcctgtctctagccctagagaaggatatttaattaatgatatcagatactaatc 475

                                                                       
Query: 125 tagaagtaataaatattcatagtttaacattaaaaaggtaggcaggtttgattcctgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tagaagtaataaatattcatagtttaacattaaaaaggtaggcaggtttgattcctgtca 415

                                                                       
Query: 185 ttatacatcttaaattgttcagtataattttacatagttctttttctaaacagacaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttatacatcttaaattgttcagtataattttacatagttctttttctaaacagacaactt 355

                                                                       
Query: 245 gtagtaatagtatagatgagatacttttaaaattatttaatacctttgtgctattgttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtagtaatagtatagatgagatacttttaaaattatttaatacctttgtgctattgttca 295

                                                                       
Query: 305 atgaattgtgaaatcttctagcatattttttctctaacatttacttctgctctgaatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgaattgtgaaatcttctagcatattttttctctaacatttacttctgctctgaatttg 235

                                                                       
Query: 365 tcttttcactacattaaataacataattcctaaattttatgtatatttaatttaatatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tcttttcactacattaaataacataattcctaaattttatgtatatttaatttaatatat 175

                                                                       
Query: 425 aacttcatatgttatcttactctataaatacttaaagaatatttaataaactattactat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aacttcatatgttatcttactctataaatacttaaagaatatttaataaactattactat 115

                                                                       
Query: 485 gtatagttagatattcatattatacatgcaatgatttataaaatatataaatataaattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtatagttagatattcatattatacatgcaatgatttataaaatatataaatataaattt 55

                                                                 
Query: 545 acattcttcacaatttattttggttaaaatttaaagatattttatattacaata 598
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54  acattcttcaaaatttattttggttaaaatttaaagatattttatattaaaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)