Query= MSMg01no357_f04.b1 MSMg01no357_f04.b1 CHROMAT_FILE:
MSMg01no357_f04.b1 PHD_FILE: MSMg01no357_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:17 2005
(668 letters)
>mm_chr14_73923720_73924787
Length = 1068
Score = 973 bits (503), Expect = 0.0
Identities = 566/601 (94%), Gaps = 24/601 (3%)
Strand = Plus / Minus
Query: 92 cttcagtgcgcagttgagttccgcgagttctctacggccctggtgtcctccgggatccag 151
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1068 cttcagtgcgcagttgagttccgcgagctctctacggccccggtgtcctccgggatccag 1009
Query: 152 ccaggagggggtgctgtgccagtacccgggccccgttagtcctcgctctgccctctcctg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ccaggagggggtgctgtgccagtacccgggccccgttagtcctcgctctgccctctcctg 949
Query: 212 gctgcaagtggaagtcgtttgtatttcttagtgtttacagagaaagtggatgttaactgg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 gctgcaagtggaagtcgtttgtatttcttagtgtttacagagaaagtggatgttaactgg 889
Query: 272 gactcttccttttgccgcgtgagatttagatatatcagagttttgtgaggctg-ctccgc 330
|||| ||||||||||| | ||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 888 gacttttccttttgccccatgagatttaaatatatcagagttttgtgaggctggccccgc 829
Query: 331 cgcttctgcgatgtggatgtgtcagtcccacaaagggggaagggtagctaagtcagtttc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 cgcttctgcgatgtggatgtgtcagtcccacaaagggggaagggtagctaagtcagtttc 769
Query: 391 ---------gtgaagaaaccctggctctgctcaaaaatgtgttctaatccgagagtgtgc 441
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgtgcaatcgtgaagaaaccctggctctgctcaaaaatgtgttctaatccgagagtgtgc 709
Query: 442 cttaaaatacgataaaagtatctaagacatccagattcggtgtgatttcctttagtcttg 501
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cttaaaatacaataaaagtatctaagacatccagattcggtgtgatttcctttagtcttg 649
Query: 502 tatagtaatataaaataatgtagtgttataaaacacttggaaggtaaagcttcaagcctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tatagtaatataaaataatgtagtgttataaaacacttggaaggtaaagcttcaagcctt 589
Query: 562 --------------aacaagcaccatacttgattctgtagactatttcaaaggaaatctg 607
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 588 cctacgccttatctaacaagcaccatacttgattctgtagacaatttcaaaggaaatctg 529
Query: 608 agacttcctattatgtaattatctgagtcactattatctaataggcttatttatttataa 667
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 528 agacttcctattatgtaattatctgggtcactattatctaataggcttatttagttataa 469
Query: 668 g 668
|
Sbjct: 468 g 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_f04.g1 MSMg01no357_f04.g1 CHROMAT_FILE:
MSMg01no357_f04.g1 PHD_FILE: MSMg01no357_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:17 2005
(528 letters)
>mm_chr14_73802128_73803055
Length = 928
Score = 1006 bits (520), Expect = 0.0
Identities = 526/528 (99%)
Strand = Plus / Plus
Query: 1 cttcactaaggaaggtggggccaagaagcctagccaaaccccgtcaagctccgggtccag 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cttcactaaggaaggtggggccaagaagcctaaccaaaccccgtcaagctccgggtccag 260
Query: 61 tgaataactctgtcagggataagacagaaaatgattgagcaggatacctgatgacctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaataactctgtcagggataagacagaaaatgattgagcaggatacctgatgacctcct 320
Query: 121 atggcctccaaagatcaccacccccatgaacacgtatatacaaatagcacagagcaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcctccaaagatcaccacccccatgaacacgtatatacaaatagcacagagcaaaca 380
Query: 181 ataacagcagcaacaacaaaagcagtactgggttctcagtcataccaaaaagacaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacagcagcaacaacaaaagcagtactgggttctcagtcataccaaaaagacaataaa 440
Query: 241 gaaaacttgaatgttttgatgcaattaaggagaaatcgggttggagagacgagtcagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaacttgaatgttttgatgcaattaaggagaaatcgggttggagagacgagtcagcag 500
Query: 301 tttacagcccatgctgctcttgaggttctgggcttgattcccagaaccaacatggtgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttacagcccatgctgctcttgaggttctgggcttgattcccagaaccaacatggtgtct 560
Query: 361 cacaaccatctacacctccagtttcagggtgtccgacaccctcttctgacttctgcagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaaccatctacacctccagtttcagggtgtccgacaccctcttctgacttctgcagcc 620
Query: 421 accaggcatgtacatggtgcacatacatacgtgcaggccaaacatgcatacatacaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaggcatgtacatggtgcacatacatacgtgcaggccaaacatgcatacatacaaact 680
Query: 481 aagtaaatctaaaaagacaaaaaggagaaaacatccaatctctatttt 528
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 aagtaaatctaaaaagacaaaaaggagaaaacatcaaatctctatttt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
