BAC Information

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BAC

Clone NameMSMg01-357K24
Chromosome14 (Build37)
Map Location 117,510,243 - 117,683,464
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K24.T7 (MSMg01no357_k24.b1)MSMg01-357K24.TJ (MSMg01no357_k24.g1)
ACCAG467526AG467527
length779785
length of high quality
(start - end)		532 (30 - 561)434 (70 - 503)
definitionCHROMAT_FILE: MSMg01no357_k24.b1 PHD_FILE: MSMg01no357_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:45 2005CHROMAT_FILE: MSMg01no357_k24.g1 PHD_FILE: MSMg01no357_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,510,243 - 117,510,759)(117,683,031 - 117,683,464)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
TGCATGTACTACAGACAACATCTATTTCTTTCCTTCTGAGTGAGATGTAA
ATAGCAGAAGTTTCTTTTTCTTCTAAGTCCAGCTGAGTGTCTGTTGTTGC
CTGTGTTTGATTTCAGTGTTGACCCTCCAAACTTCTGAGACTTCTGTGAT
CCTAGAAAGTAAAAAGAATCTTAGAGACTCTGCAAAGTGCAAAAACTACT
ACAGGGGTGTGAACCATGTTTTCTTCTCCAATATTATTGGCTGAAATGTC
TTAAAATCAAATAGTAGAGAAATCCATTACTGTTTGTCTCGCTTATAAGA
AAGGGTCTGGAGTGGAAGGTAAAATGATCTATCTCCTTCCTGAATTTTGT
AGGATGGATATTTATCTTGGAACTTCCAATCACAATGTCTTATTTATTAA
AATTCAATATTCATCTGTCCCATTTTTAAAATATACTTTATTAATTAATA
TACATCATCACCTCAGAGCAATATCTTTACNAGGCCTGGGATTTAAAATA
TTTTCTTGCTGTATTTGTAAGGGAGTTTGAAGTATGGGACATTGGGCAAG
ACATATTGACTTAAGTGATTTCTTTCTCCACAGATTTGTGGCTACTTGGC
TACTGATAGTTTTTCTATAAAAAATCTTTTTTTTTTAAAAAATACCCTTT
TAAAGTGTATTTTTTTTTTGCTAATAAAAAAAAAAAACTCTTGGCTCACT
TTTTTTTTTTTAGAAAGATTTAAAAAATT

GATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAAGCCAGAACGAGGGTGTGGCCATGCATA
TGTTGGTTCTACTTCTGCAGTTGAGTAAGAATCTAAAATTAATGAAGCTA
TGTTCTCCCTTAAGCTACAGGTAAAATGACAGGTGAAAACTTGAATCATT
GCTATATGATTTCTGCCATAACTGGAGGAGACTTACATGGCACAGACTTC
TTGTGTGGAATTCCTAATATTACTTAAATCTAGTGAAAGGAAAATCACCT
GGAAAGTGACTGAGTGTAGTGAACAGTAGCGCATGGAGTATAGTTCTTAG
AAATGGTTTAATAGTGATATAATGACAATTGCTGTGGGCATTTTCCTTCA
TTATCTCTGTCACATACCAGTGTTTCTTTAGGGATCCACCCTCACACATG
ACTATTACATAACCTATTTAGTCATAGCCACAGAAATACTTGGACTTCTA
ACAATGGATTCCTGATGACNAATATCCACATCTGTGCTTGGCTTAAATAA
AGAAACCCCAAAGAAACCAGGGAGGGCCACATAATTCTTGTCCAAGGGAT
GTTTATTGTGCCTCCCCAAGGATTTGTTCTTATTAGCCGGTAAAAAGGAA
AGGGGGTTTTATAAAATCCCCCCGGAAATCTTAGTACCCCAATTTGGGAA
TGGGCCCCAAAAAAAAAGCCAACCCGTTTTTGTTGAAAAAATTTAAAAAC
ATATCCTAAAAAATCCCCTTGGGGAAGTTTATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k24.b1 MSMg01no357_k24.b1 CHROMAT_FILE:
MSMg01no357_k24.b1 PHD_FILE: MSMg01no357_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
         (532 letters)



>mm_chr14_117510028_117510959
          Length = 932

 Score =  948 bits (490), Expect = 0.0
 Identities = 510/517 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctgcatgtactacagacaacatctatttctttccttctgagtgagatgtaaatag 75
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 216 gaattctgcatgtacaacagacaacatcgatttctttccttctgagtgagatgtaaatag 275

                                                                       
Query: 76  cagaagtttctttttcttctaagtccagctgagtgtctgttgttgcctgtgtttgatttc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cagaagtttctttttcttctaagtccagctgagtgtctgttgttgcctgtgtttgatttc 335

                                                                       
Query: 136 agtgttgaccctccaaacttctgagacttctgtgatcctagaaagtaaaaagaatcttag 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtgttgaccctccaaacttctgagacttctgtgatcctagaaagtaaaaagaatcttag 395

                                                                       
Query: 196 agactctgcaaagtgcaaaaactactacaggggtgtgaaccatgttttcttctccaatat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agactctgcaaagtgcaaaaactactacaggggtgtgaaccatgttttcttctccaatat 455

                                                                       
Query: 256 tattggctgaaatgtcttaaaatcaaatagtagagaaatccattactgtttgtctcgctt 315
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 tattggttgaaatgtcttaaaatcaaatagtagagaaatccattactgtttgtcttgctt 515

                                                                       
Query: 316 ataagaaagggtctggagtggaaggtaaaatgatctatctccttcctgaattttgtagga 375
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 516 ataagaaagggtctgtagtggaaggtaaaatgatctatctccttcctggattttgtagga 575

                                                                       
Query: 376 tggatatttatcttggaacttccaatcacaatgtcttatttattaaaattcaatattcat 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggatatttatcttggaacttccaatcacaatgtcttatttattaaaattcaatattcat 635

                                                                       
Query: 436 ctgtcccatttttaaaatatactttattaattaatatacatcatcacctcagagcaatat 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctgtcccatttttaaaatatactttattaattaatatacatcatcacctcagagcaatat 695

                                                
Query: 496 ctttacnaggcctgggatttaaaatattttcttgctg 532
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 696 ctttacaaggcctgggatttaaaatattttcttgctg 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_k24.g1 MSMg01no357_k24.g1 CHROMAT_FILE:
MSMg01no357_k24.g1 PHD_FILE: MSMg01no357_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
         (434 letters)



>mm_chr14_117682831_117683664
          Length = 834

 Score =  777 bits (402), Expect = 0.0
 Identities = 426/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagccagaacgagggtgtggccatgcatatgttggttctacttctgcagttgagtaag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctaatccagaacgagggtgtggccatgcatatgttggttctacttctgcagttgagtaag 575

                                                                       
Query: 61  aatctaaaattaatgaagctatgttctcccttaagctacaggtaaaatgacaggtgaaaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aatctaagattaatgaagctatgttctcccttaagctacaggtaaaatgacaggtgaaaa 515

                                                                       
Query: 121 cttgaatcattgctatatgatttctgccataactggaggagacttacatggcacagactt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 514 cttgaatcattgctatatgatttctgccataactggagaagacttacatggcacagactt 455

                                                                       
Query: 181 cttgtgtggaattcctaatattacttaaatctagtgaaaggaaaatcacctggaaagtga 240
           ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 454 ctcatgtggaatacctaatattacttaaatctaatgaaaggaaaatcacctggaaagtga 395

                                                                       
Query: 241 ctgagtgtagtgaacagtagcgcatggagtatagttcttagaaatggtttaatagtgata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgagtgtagtgaacagtagcgcatggagtatagttcttagaaatggtttaatagtgata 335

                                                                       
Query: 301 taatgacaattgctgtgggcattttccttcattatctctgtcacataccagtgtttcttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 334 taatgacaattgctgtgggcattttccttcattatctctgtcacataccagtgtttctct 275

                                                                       
Query: 361 agggatccaccctcacacatgactattacataacctatttagtcatagccacagaaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agggatccaccctcacacatgactattacataacctatttagtcatagccacagaaatac 215

                         
Query: 421 ttggacttctaaca 434
           ||||||||||||||
Sbjct: 214 ttggacttctaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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