BAC Information

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BAC

Clone NameMSMg01-358A19
Chromosome14 (Build37)
Map Location 117,353,736 - 117,354,201
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358A19.T7 (MSMg01no358_a19.b1)MSMg01-358A19.TJ (MSMg01no358_a19.g1)
ACCAG467799AG467800
length745739
length of high quality
(start - end)
478 (39 - 516)466 (63 - 528)
definitionCHROMAT_FILE: MSMg01no358_a19.b1 PHD_FILE: MSMg01no358_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:13 2005CHROMAT_FILE: MSMg01no358_a19.g1 PHD_FILE: MSMg01no358_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGTAGCCTATGTATTTGCCACCACACCATTATGATGGACAGAAAACACAT
AATCCCTGAAATATATATTTTTTTTTTAATATCAGAGAACCTAGTTGCTA
AAACCTAATTGATCTTTACCAACAATACATCTGATAGAGGATCAGTTTGT
TGCTCAGCACTCATGAGATATGCTTCTTCCTGCAGGAAATGGGAGCTAAC
GTATAGAACGGCATCTACACAATAGACAATGTGAAATCCTTTGGAGTACT
CTGCCCTAATTGGGATGTTTTCATCAAACCTCTGCTTGATTCAGGGTCCA
GGGACATATACAGAAGAGAGGAGAGCTAGATTATAGGAGCCAGGGGGAAT
AGATGAATCCAGGAAAATAACATCTTACAGACACAACAGAAGAGATGTGC
ATATGAACTCACAGAGACTGGCAGCATGCCCATATGAACTCACAGAGATG
CTGGCATCATGCACAAGACCAACACAAGTTCTAAGCAAACAAAATTCCCG
CACAGAGAACAGAAAGTAGACCANAAAGTATCTCAACCGTTTTTATCCTC
TACCTCAGCTATTTGTCATGATTTCAGAATAATCCTACTGGCATGTCCTG
AATGTATTGGACGCTAGTGGGCACTTAACTCCCTGTACCCGACTCTCTAC
AGGCCTGGATCTTTTCCCAGACGGCCTCCCTTTTGAACCACTTTC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTAAGTCATCATTTCTTTGTGCCTCTTGAGTAATACATG
ACAGACTACAGAATACTAAATCACATTTTACTACTTATAGAATGGCAGGA
GCTGCAAGGCTATATATAATTCTCTATTACTTCTGCCTTCCATAAGTGAT
ATTTACCAGCAGAGCCCTCACTCTGACATCTAATCTCCTTAAATTCTAAT
CAAGTTATTAACATCACTTACATTTCACTGCCTTTATTCTGACACTGAGC
GGAAACTTAACAATACAACCTTTAGAGGCTACCCAACCTGCCTGCCCTAA
ACCCTGAAGTTTCTTAAGATTCAAGCACTTAAAATGAAGGCTATTCCAGG
TCAGGGCAATTCACATATTGACACATGAATACTCATATTATTAAGTTCCA
TTCTTCTTTCTCATAAATGAGGTTTCTGTGTCAAACAAAGTCTAATCACT
TCTCTGCCTTGATCATGTATGTTTCTTAGTTTCATAGATTATGATTCTTA
CAACCACTCATGTGATAACCTTTTTATTTCTTCAGCCCCAAAGCTTTTTA
TGTGAATATTGGCCAACCATGCTGAGAGTGTGTATATAAAATATTAACTG
CGACATATTATGGTTGTCTTAAAATATTCCCCGCCCCGAAAATTGGTTTC
CAATATAACGAAACCCCCTAGGGGTAATGTCCAAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_a19.g1 MSMg01no358_a19.g1 CHROMAT_FILE:
MSMg01no358_a19.g1 PHD_FILE: MSMg01no358_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:13 2005
         (466 letters)



>mm_chr14_117353536_117354401
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtcatcatttctttgtgcctcttgagtaatacatgacagactacagaatactaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 taagtcatcatttctttgtgcctcttgagtaatacatgacagactacagaatactaaatc 607

                                                                       
Query: 61  acattttactacttatagaatggcaggagctgcaaggctatatataattctctattactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acattttactacttatagaatggcaggagctgcaaggctatatataattctctattactt 547

                                                                       
Query: 121 ctgccttccataagtgatatttaccagcagagccctcactctgacatctaatctccttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctgccttccataagtgatatttaccagcagagccctcactctgacatctaatctccttaa 487

                                                                       
Query: 181 attctaatcaagttattaacatcacttacatttcactgcctttattctgacactgagcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attctaatcaagttattaacatcacttacatttcactgcctttattctgacactgagcgg 427

                                                                       
Query: 241 aaacttaacaatacaacctttagaggctacccaacctgcctgccctaaaccctgaagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaacttaacaatacaacctttagaggctacccaacctgcctgccctaaaccctgaagttt 367

                                                                       
Query: 301 cttaagattcaagcacttaaaatgaaggctattccaggtcagggcaattcacatattgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttaagattcaagcacttaaaatgaaggctattccaggtcagggcaattcacatattgac 307

                                                                       
Query: 361 acatgaatactcatattattaagttccattcttctttctcataaatgaggtttctgtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acatgaatactcatattattaagttccattcttctttctcataaatgaggtttctgtgtc 247

                                                         
Query: 421 aaacaaagtctaatcacttctctgccttgatcatgtatgtttctta 466
           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 246 aaacaaagtctaatcacttctctgccttgataatgtatgtttctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)