BAC Information

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BAC

Clone NameMSMg01-358D07
Chromosome14 (Build37)
Map Location 116,987,123 - 116,987,599
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358D07.T7 (MSMg01no358_d07.b1)MSMg01-358D07.TJ (MSMg01no358_d07.g1)
ACCAG467917AG467918
length722736
length of high quality
(start - end)
532 (36 - 567)477 (63 - 539)
definitionCHROMAT_FILE: MSMg01no358_d07.b1 PHD_FILE: MSMg01no358_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:25 2005CHROMAT_FILE: MSMg01no358_d07.g1 PHD_FILE: MSMg01no358_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTC
ATGTGGCTATCTTCTTTTAGGTTTGTTGAAACATTACTTTCTTGCTTTTT
CTAAGGTATAGTTTCCCTCCTTATGTTGGCGTTTTCCCTTTATTATCCTT
TGAAGAGCTGGATTCATGGAAAGATATTGTGTGAATTTGGTTTTGTCATG
GAATACTTTGTTTCTCCATCTATTGCAATTGAGAGTTTTGCTGGGTATAG
TAGCCTGGGCTGGCATTTGTGTTCTCTTAGGGTCTGTATGACATCTGTCC
AGGATCTTCTGGCTTTCATAGTCTCTGGTGAGAACTCTGGTGGAATTCTA
ATAGGTCTGCTTTTATATGTTACTTGACCTTTCTCCCTTACTGCTTTTAA
TATTCTTCCTTTGTTTTGTGCATTTGGTGTTTTGATTATTATGTGACGGG
AGGAATTTCTTCTTTGGTCCAACTATTTGAAGTTCTGTAGATTTCTTGTA
TGTTCATGGACATCTCTTTCTTTAGGTTAGGGAAGTTTTCTATAACTTTG
TTGAAGATATTTATTGGCCCTTTACGTTCAAAGTGTGGCTACTTTAGTCC
TTCTTAGAAGGAGCTCCCTAAGACTAAACCCTCAAACAGAGAAAACTCTT
GGTGGGACTCGTGTCTCTAGCTGCCTCTGGAACAAAAGATGGCCTAATCC
TTCCTCCATGGGTATAAAAACC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTATTTCCTGGTGTCTTTCTTGTAATTCCTACTCTAGA
GGCCAGGGAATAAATGTTCCAGTTGTAGCCATAATGAGAACCTGCCTCAA
TAATGAATGTAAATTAATCAATGAATGAACTCATTGCCCAATTACATTCC
CAGATAATACACTAAATATGATATTGACATACTTAAGCTTGAATCAGGGT
TTATTTGGTCAATATCTCTCCTTGCAAATAACTGTCATAAAGATTCCAGT
CAGGCTAAAAGGGAGCCAACCATTCTGTAGCCCCAGTTCATTTACAAGGA
TGCTGTGGTGTTTCCTAAAGCAGCCTTTGTTCTATGTACTGTGGGGATAG
GGTGTATTTCCTTGGGATTTCCTCCATTGTTTATCTTCTTTATAATCTCG
TATAACTCTGACAAAGATTGTATAGTTGTTAAAGTTCCTGATAACATCTA
TTCAGAAGACTTCTAAGAGTGTGCTCTTGATTTTGGTAAATAGACTTTGT
TGAACAAAGAGNTAGCTTGATACTTCCCTCATTCATTTTATCTAGAATTC
ATCCTCCTACGGNCTTCCCTGCTTCTGGTTAAAAAGCCCAAAAAATGAAC
GGTAAATTTTACTCATTCCTTTTTTCTTGGAAACAACCATTTATTTTTTT
TCCTGTGACCGTGGGAAAAAAATTCTTTTTTAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_d07.g1 MSMg01no358_d07.g1 CHROMAT_FILE:
MSMg01no358_d07.g1 PHD_FILE: MSMg01no358_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:25 2005
         (477 letters)



>mm_chr14_116986923_116987799
          Length = 877

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatttcctggtgtctttcttgtaattcctactctagaggccagggaataaatgttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttatttcctggtgtctttcttgtaattcctactctagaggccagggaataaatgttccag 618

                                                                       
Query: 61  ttgtagccataatgagaacctgcctcaataatgaatgtaaattaatcaatgaatgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgtagccataatgagaacctgcctcaataatgaatgtaaattaatcaatgaatgaactc 558

                                                                       
Query: 121 attgcccaattacattcccagataatacactaaatatgatattgacatacttaagcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attgcccaattacattcccagataatacactaaatatgatattgacatacttaagcttga 498

                                                                       
Query: 181 atcagggtttatttggtcaatatctctccttgcaaataactgtcataaagattccagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcagggtttatttggtcaatatctctccttgcaaataactgtcataaagattccagtca 438

                                                                       
Query: 241 ggctaaaagggagccaaccattctgtagccccagttcatttacaaggatgctgtggtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggctaaaagggagccaaccattctgtagccccagttcatttacaaggatgctgtggtgtt 378

                                                                       
Query: 301 tcctaaagcagcctttgttctatgtactgtggggatagggtgtatttccttgggatttcc 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcctaaggcagcctttgttctatgtactgtggggatagggtgtatttccttgggatttcc 318

                                                                       
Query: 361 tccattgtttatcttctttataatctcgtataactctgacaaagattgtatagttgttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccattgtttatcttctttataatctcgtataactctgacaaagattgtatagttgttaa 258

                                                                    
Query: 421 agttcctgataacatctattcagaagacttctaagagtgtgctcttgattttggtaa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agttcctgataacatctattcagaagacttctaagagtgtgctcttgattttggtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)