BAC Information

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BAC

Clone NameMSMg01-358E09
Chromosome14 (Build37)
Map Location 84,741,427 - 84,741,890
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E09.T7 (MSMg01no358_e09.b1)MSMg01-358E09.TJ (MSMg01no358_e09.g1)
ACCAG467969AG467970
length735729
length of high quality
(start - end)
476 (37 - 512)464 (64 - 527)
definitionCHROMAT_FILE: MSMg01no358_e09.b1 PHD_FILE: MSMg01no358_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:29 2005CHROMAT_FILE: MSMg01no358_e09.g1 PHD_FILE: MSMg01no358_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
CAAAACTGAACACATAGTCAGCAACAAAGCAAGTGTCACAGATGCAAGAA
AACTGAAATAAACTCCTGTATGCTATCAGAACACCACTGATTAAAGTTGG
ATTTCAACAGCAATGGAAACAATACAAATCCTACAAACTTATGGAAAAAT
GAACATCTCTTTAATGAAGGAAAATTGCGTCAAGACAGAAATAAACAATG
AAATTAAAAAAAAAACTTTTAACATTCAATAAAAATGAATACACAACATA
CCCAAACCCATGGGGTACTATTAAATTGGTAATAAGAGTTGATAGCACTA
TGTTCCTACATTTAAAAAAAAATAAGAGAGTGAGATGTTCTAAAAGCAAC
TTAACAGCATATCTGAAATAAGTAAGGACATCTAAAATGGGAATGTGGTA
GTAAATAATAAAACTGGTGGCTGAAATCAATAAAATAAAATCAAAGAGAA
AATAGAGAANATAAATGAAATAAAGAGATGGTTATCTGAAAAATTCAAGA
TAGACAACTCTGAAGCAACTAAAATATATGAAGAGAATGCCCAAGTTAAC
AAAATCAGAAATAAAGGGAGGACATGACAACAGACAGTGAAAAAAAAGAA
ATGATCCTTAAGCCTTACTTTTTAAAACTGTTTGCCCCAATAGGAAATCC
CTAAGAAATGGATCAGTTCTCCATAAAAAAAATTT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGTTCACTTTTGCCTTGCATTTGCATTTTTGTCTC
TGCTAATGGCAGTTTTCACTTTCACTTTGTCCTTAACAGGCACTTATCAA
GAATCAAATGAAGAAAACTGGGACTGTGATTCATTCTTGTTTGTCTCTGA
GGATCCTAGGAGCAGAATAGATTACTAGTCCCGTGTTTGTTAATAATGGT
GGTGTGGTTGAGTCAACGTGAGGGCCTGGTCTGGGAACATCAGCTAAAGT
CTGGATGTTTTCTCCTGATGGGAACTTAGTTCTGACAAAAATTTGCACTC
GGACTTGTTGCAAACAACAGCTAGATGATTTTCAAAAGTTTAGAAAGGTC
TTGCTGGATCGTTGGTTCCAAGACAGTAGGAGCACTCAGTGGTAATTCAA
GCAAGGATAAGGAACTGTCTTGGGTTACCACTGGCAAGATCCCTTGGCAT
TAAAGGAATTAGAACTTCTGATTAGGATATGGGGAAATGCTAGGTAGTAT
TCATTCCAAATTTACTGCTTTATGTAATTAATCACCTCTTTAAACTGTAA
CAGCAATTGCTGCCAATCAAGGCCACTTGTTCATATTCCAATGTTTTCAA
TTGCTAATTACCTGATTGCTGAATCTATGGTTCCCTTCCCTGGAATCAAT
TCTTGGGTTTAACACAAAAATTAGGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e09.g1 MSMg01no358_e09.g1 CHROMAT_FILE:
MSMg01no358_e09.g1 PHD_FILE: MSMg01no358_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:30 2005
         (464 letters)



>mm_chr14_84741227_84742090
          Length = 864

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggttcacttttgccttgcatttgcatttttgtctctgctaatggcagttttcactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttggttcacttttgccttgcatttgcatttttgtctctgctaatggcagttttcactttc 605

                                                                       
Query: 61  actttgtccttaacaggcacttatcaagaatcaaatgaagaaaactgggactgtgattca 120
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 604 actttgtccttaacagccacttatcaagaatcaaatgaagaaaactgggaatgtgattca 545

                                                                       
Query: 121 ttcttgtttgtctctgaggatcctaggagcagaatagattactagtcccgtgtttgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcttgtttgtctctgaggatcctaggagcagaatagattactagtcccgtgtttgttaa 485

                                                                       
Query: 181 taatggtggtgtggttgagtcaacgtgagggcctggtctgggaacatcagctaaagtctg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 484 taatggtggtgtggttgagtcaacatgagggcctggtctgggaacatcagctaaagtctg 425

                                                                       
Query: 241 gatgttttctcctgatgggaacttagttctgacaaaaatttgcactcggacttgttgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gatgttttctcctgatgggaacttagttctgacaaaaatttgcactcggacttgttgcaa 365

                                                                       
Query: 301 acaacagctagatgattttcaaaagtttagaaaggtcttgctggatcgttggttccaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acaacagctagatgattttcaaaagtttagaaaggtcttgctggatcgttggttccaaga 305

                                                                       
Query: 361 cagtaggagcactcagtggtaattcaagcaaggataaggaactgtcttgggttaccactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtaggagcactcagtggtaattcaagcaaggataaggaactgtcttgggttaccactg 245

                                                       
Query: 421 gcaagatcccttggcattaaaggaattagaacttctgattagga 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcaagatcccttggcattaaaggaattagaacttctgattagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)