Query= MSMg01no359_c03.b1 MSMg01no359_c03.b1 CHROMAT_FILE:
MSMg01no359_c03.b1 PHD_FILE: MSMg01no359_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(589 letters)
>mm_chr14_19990858_19991845
Length = 988
Score = 888 bits (459), Expect = 0.0
Identities = 557/593 (93%), Gaps = 14/593 (2%)
Strand = Plus / Plus
Query: 5 gaattccacaaagctttacatagtatcc-atcaaattaatgattaatatgcacac--ata 61
|||||||| |||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct: 200 gaattccagaaagctttacatagta-ccaatcaaattaattattaatatgcacacttata 258
Query: 62 tctaaaactaccttcatcaaagctaacca-tcggacaacacttcctgtaccttcatatga 120
||||||| ||||| ||||| ||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 259 tctaaaattacctccatcagagctaaccact-ggacagcacttcctgtaccttcatatga 317
Query: 121 gctacttgtgtttttgtacattttttcctttacatgttaacaaagacttatgtttagggc 180
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct: 318 gctacttgtgtttttgtacattctttcctttacatgttaacaaagacatatgtttggggc 377
Query: 181 catgcatttgccccaaattctaagctatggttctgatcaatcagtattagggt--atgca 238
| || ||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct: 378 cgtgaatttgcccctaattctaagctatggttctgatcaatcagtattagggtgtat--a 435
Query: 239 ttcaataaaccatttctgattggcctagataggtgtttgggtggtttgggggctactcag 298
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 436 ttcaataaaccattcctgattggcctagataggtgtttgggtggtttggaggctactcag 495
Query: 299 aaatcagaac---atgttagtcccttagactatcaactgaaatatgtctgtagtattgtc 355
|||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 aaatcagaactacatgctagtcccttagactatcaattgaaatatgtctgtagtattgtc 555
Query: 356 ctacatcgtctgcctgcatcccactaccccacacctcttaactatattcttttttttcag 415
||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct: 556 ctacatcatctgcctgcatcacactaccccacacctcttcactatattcttttttt-cag 614
Query: 416 acataatctcatagttatatcacaaagccctgtaagcaatcttgctttggtgtgtttggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acataatctcatagttatatcacaaagccctgtaagcaatcttgctttggtgtgtttggt 674
Query: 476 gcacagaggagagccccactctcggcccaaggcctttttcattgatggctccactatttc 535
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 675 gcacagaggagagccccactctcagcccaaggtctttttcattgatgcctccactatttc 734
Query: 536 ggtgtcctatgtcaacagatctccacacttttgtcagcaccatgatggctgca 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggtgtcctatgtcaacagatctccacacttttgtcagcaccatgatggctgca 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_c03.g1 MSMg01no359_c03.g1 CHROMAT_FILE:
MSMg01no359_c03.g1 PHD_FILE: MSMg01no359_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(474 letters)
>mm_chr12_3221966_3222839
Length = 874
Score = 855 bits (442), Expect = 0.0
Identities = 468/480 (97%), Gaps = 6/480 (1%)
Strand = Plus / Minus
Query: 1 ctttcatctgtgtctctgtgtctctgtgtctctgtgtctgtctgtctgtctgtctgtctg 60
||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 763 ctttcatttgtgtctctgtgtctctgtgtctgtctgtctgtctgtctgtctgtctgtctg 704
Query: 61 tctctctctctctctctct------ctctcacacacacacacacacagctgcaatgcctc 114
||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 703 tctctctctctctctctctcacacacacacacacacacacacacacagctgcaatgcctc 644
Query: 115 ctgcaggcagagaagacttacatcagggtctgtagtttgcacttggtgtagcttaagctt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgcaggcagagaagacttacatcagggtctgtagtttgcacttggtgtagcttaagctt 584
Query: 175 tcacaaaggtttttcactccattatccccaagtttattgttggccaggctgaggtgtgtc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcacaaaggtttttcactccattatccccaagtttattgttggccaggctgaggtgtgtc 524
Query: 235 agagtccggctgaccatcaaaatggaagagaggtccttgcagcaggcttcagtgagatga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agagtccggctgaccatcaaaatggaagagaggtccttgcagcaggcttcagtgagatga 464
Query: 295 cagttctccagcctgtggataaagcatacagctggaccaagcaggagtggctcaaccaac 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 463 cagttctccagcctgtggataaagcacacagctggaccaagcaggagtggctcaaccaac 404
Query: 355 aataattctaggaaggggagaggctcacagggccccactcaactcaactgttgtctatga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aataattctaggaaggggagaggctcacagggccccactcaactcaactgttgtctatga 344
Query: 415 ataaactttaggagaagggggataactatctttagttgtgtctcctctgctgagcccatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ataaactttaggagaagggggataactatctttagttgtgtctcctctgctgagcccatc 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
