BAC Information

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BAC

Clone NameMSMg01-359D02
Chromosome14 (Build37)
Map Location 124,542,192 - 124,760,105
singlet/doubletdoublet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D02.T7 (MSMg01no359_d02.b1)MSMg01-359D02.TJ (MSMg01no359_d02.g1)
ACCAG468666AG468667
length719729
length of high quality
(start - end)		522 (33 - 554)554 (61 - 614)
definitionCHROMAT_FILE: MSMg01no359_d02.b1 PHD_FILE: MSMg01no359_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:38 2005CHROMAT_FILE: MSMg01no359_d02.g1 PHD_FILE: MSMg01no359_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(124,542,192 - 124,542,709)(124,759,552 - 124,760,105)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTAGAA
GGCTGATGAAAAGAGCATGGTAAAGGCACTAAGGAAATGATAACTATCAG
TAAGCCATACAAAGTTTCATATATCCTTCCACTTATCTCTTGGGATGATA
TTAATTTTCTTCCACTTACAAACACAATGCTGCTGAGAGAATCCATTCCT
TCCTTCAGTTATTCTAGTATAATGCAGTTTGCCTGGGAAATGTCCCATAA
ACTCATGTGCCTGAACACTTGCTCTCTACCTGGTAGTGCTATTTGAGGTT
ATTGAACCTTTAGGAGGGGCAGTTTTTATGCTGGAGGAAGTGAATCTTCG
TGGGCAGGCTTTGAGGTGTGATAGGGAGTCCCACTTCCTGCTTACTCTTG
GCTTCCTGATTGCCAATGCAATGTGACAAGCTGGCCAACCTGCTCTTAAT
ACCATGTCTTCCTCTTTGTGTTAGAATGTATCTCCTTGAAATTCAGGACA
GAATAAACCCTCTCTTGTTAAATTGTTCCTCACAAATGAAAATCAAATCC
AAACGAAATAGATTTATGGGGTAGGCCAAGGAAGTTCTGTGTGAATCTGT
TTTTATGGCAAGGACCCTGAGGCTTCAGATCCATGGAAACTGGCAAAAGC
TTCCTCTGAACCATATGCAAATGTGACACATACGATGTGCCCACTTTACT
GTACATGGCTTTGCGAGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATTAAAATGACCATAAATTAGTCTGGAAGAATATTTGTTA
CTGGGAGAATATTTATCCTTGACAAATTCACTAAGAAATATATGTTTCTA
ACAGTGTCTAAGGCCAAATGCTTTGTAAGTATGGCTATCACTAGAGATTT
GGAAAGATGTTAATTTCTGAATCTTCCCACTCTAAACCTCAGTCATTTGG
GGACTGCATGCCAAGAAATTTTAGGGATTGGCAGGAGATAGAAATTAATC
TTCCTTCAAAAAATCTAATGCTGATTTTCTATATGTTGAATTGTCCATGA
TTATACTAAAATCTTGCCTTGAACTTGCCTCAGCCCTTCATGACTGCCTA
AAGTGTCAATGATTCCTACTTACTTTTGTTGTTCTTTCCTTTAAAAAGGC
AATGCAGGATGTTACATAGCAGATGGAAATAAAGTGTGAGGGAAGAAATT
CAGCATCCTTGAAAATTCAAGTGTTTGGGGTCTCTTATACTTCTAAGGCA
CCGAAAAGCTCCATTTCTTCTTACTTATATGCCGAGAACATAAAATTTTA
TGTGAGGACTCAGGAATAGAATCTGTGATGCAAATTACAGCTTCAGGGGA
TTTGATTGTTCTTATGAAACATAAATTTCTTAAGCGTTCGTTAGTCCACT
GACCATCATCCAAGTTACTAACCCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d02.b1 MSMg01no359_d02.b1 CHROMAT_FILE:
MSMg01no359_d02.b1 PHD_FILE: MSMg01no359_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:38 2005
         (522 letters)



>mm_chr14_124541988_124542909
          Length = 922

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctagaaggctgatgaaaagagcatggtaaaggcactaaggaaatgataacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctagaaggctgatgaaaagagcatggtaaaggcactaaggaaatgataacta 264

                                                                       
Query: 65  tcagtaagccatacaaagtttcatatatccttccacttatctcttgggatgatattaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagtaagccatacaaagtttcatatatccttccacttatctcttgggatgatattaatt 324

                                                                       
Query: 125 ttcttccacttacaaacacaatgctgctgagagaatccattccttccttcagttattcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttccacttacaaacacaatgctgctgagagaatccattccttccttcagttattcta 384

                                                                       
Query: 185 gtataatgcagtttgcctgggaaatgtcccataaactcatgtgcctgaacacttgctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtataatgcagtttgcctgggaaatgtcccataaactcatgtgcctgaacacttgctctc 444

                                                                       
Query: 245 tacctggtagtgctatttgaggttattgaacctttaggaggggcagtttttatgctggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacctggtagtgctatttgaggttattgaacctttaggaggggcagtttttatgctggag 504

                                                                       
Query: 305 gaagtgaatcttcgtgggcaggctttgaggtgtgatagggagtcccacttcctgcttact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagtgaatcttcgtgggcaggctttgaggtgtgatagggagtcccacttcctgcttact 564

                                                                       
Query: 365 cttggcttcctgattgccaatgcaatgtgacaagctggccaacctgctcttaataccatg 424
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 ctcggcttcctgattgccaatgcaatgtgacaagctggccatcctgctcttaataccatg 624

                                                                       
Query: 425 tcttcctctttgtgttagaatgtatctccttgaaattcaggacagaataaaccctctctt 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 tcttcctctttgtgttagaatgtatctctttgaaattcaggacagaataaaccctctctt 684

                                                 
Query: 485 gttaaattgttcctcacaaatgaaaatcaaatccaaac 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttaaattgttcctcacaaatgaaaatcaaatccaaac 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_d02.g1 MSMg01no359_d02.g1 CHROMAT_FILE:
MSMg01no359_d02.g1 PHD_FILE: MSMg01no359_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:38 2005
         (554 letters)



>mm_chr14_124759352_124760305
          Length = 954

 Score = 1025 bits (530), Expect = 0.0
 Identities = 548/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaatgaccataaattagtctggaagaatatttgttactgggagaatatttatcctt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 attaaaatgatcataaattagtctggaagaatatttgttactgggagaatatttatcctt 695

                                                                       
Query: 61  gacaaattcactaagaaatatatgtttctaacagtgtctaaggccaaatgctttgtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gacaaattcactaagaaatatatgtttctaacagtgtctaaggccaaatgctttgtaagt 635

                                                                       
Query: 121 atggctatcactagagatttggaaagatgttaatttctgaatcttcccactctaaacctc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 634 atggctatcactagagatttggaaagatgttaatttctgaatcttctcactttaaacctc 575

                                                                       
Query: 181 agtcatttggggactgcatgccaagaaattttagggattggcaggagatagaaattaatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 574 agtcatttggggactgcatgccaagaaattttagggattggcaggagacagaaattaatt 515

                                                                       
Query: 241 ttccttcaaaaaatctaatgctgattttctatatgttgaattgtccatgattatactaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttccttcaaaaaatctaatgctgattttctatatgttgaattgtccatgattatactaaa 455

                                                                       
Query: 301 atcttgccttgaacttgcctcagcccttcatgactgcctaaagtgtcaatgattcctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcttgccttgaacttgcctcagcccttcatgactgcctaaagtgtcaatgattcctact 395

                                                                       
Query: 361 tacttttgttgttctttcctttaaaaaggcaatgcaggatgttacatagcagatggaaat 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 394 tacttttgttgttctttcctttaaaaaggcaatacaggatgttacatagcagatggaaat 335

                                                                       
Query: 421 aaagtgtgagggaagaaattcagcatccttgaaaattcaagtgtttggggtctcttatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaagtgtgagggaagaaattcagcatccttgaaaattcaagtgtttggggtctcttatac 275

                                                                       
Query: 481 ttctaaggcaccgaaaagctccatttcttcttacttatatgccgagaacataaaatttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttctaaggcaccgaaaagctccatttcttcttacttatatgccgagaacataaaatttta 215

                         
Query: 541 tgtgaggactcagg 554
           ||||||||||||||
Sbjct: 214 tgtgaggactcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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