BAC Information

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BAC

Clone NameMSMg01-359D06
Chromosome14 (Build37)
Map Location 80,905,384 - 81,086,399
singlet/doubletdoublet
Overlap genenone
Upstream geneElf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D06.T7 (MSMg01no359_d06.b1)MSMg01-359D06.TJ (MSMg01no359_d06.g1)
ACCAG468674AG468675
length741764
length of high quality
(start - end)		441 (31 - 471)294 (61 - 354)
definitionCHROMAT_FILE: MSMg01no359_d06.b1 PHD_FILE: MSMg01no359_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:39 2005CHROMAT_FILE: MSMg01no359_d06.g1 PHD_FILE: MSMg01no359_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,085,963 - 81,086,399)(80,905,384 - 80,905,674)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAACCTGT
GCAAATAACTTTGCTGGTTTTGCTTTTAAAGAGGTATACAGTTTTATTTA
AACGAATAGTTCAGTTTTAAATTTTGTGTCATAACTAAGCTAATATCAGC
TCTCAATCCTTATCCTAACAGCTCTCAGAGCACATTGTTTTCTTATTTTT
TCTTTTTCCCAGGAGGGAATGGGATCATTGCCTTGTCAGACACAGAAATA
CCATCAGCCAATATAAACCTGATTTAATCCTCTTACCTAGAACATGTGGG
ATTAGGGATGGGCAGATGTGGCCTGACAGGAGGATTATGACACAATTTAC
AAATAATTGCAGGTAACTCAGTCACTGTGAATTCAAACTATTTGCCTGTG
AACTTCAAGCATGCCTTAAGATAGCAAGAAAAATGGGTTTGAGCTCTTAA
TGGGCTTCTTGTTACCTTATCATAGCCTGGTCACTCACATCGCCTTCTTC
CTCTTCGTGATCTCATCTATAAACAATGATAGAGTTATATATCTCCCAAT
ATTACCCTGCAGAGCAACATTAACCATGGTTACGATGGAACCATATTGTG
GAAGTCTTCATTTGTATTACCCGTCGCTTGTTTTATATAGCTAACTTTTC
CACCATAACTGCCCATTTATTACCCTCCTATGGATAATATAAAATTCCAA
ACTCCTATTTTTCCCCCCCCCCCGCCGGCATATATTGCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGGAAAGCCTCACATGGCACCATTGATGCCCACACCTTT
CAGAGGCAAAAGTCACACTCTCTCCCTTTGCTTACAGTTGTAACCTAGAC
CTGCAGGGCAGTTTCTCCTGCACTCATTGATCACATACATATGGGGCATT
AAACCCGTTTAAAACTATGTGCTGTCCAAACCTGCTCCCATGAGTTTGTG
ACTCTATACTGGTTTTTGTTGCTGTTGTTATTTATTTGTTTATTTATTTA
TTTATTTATTTTTGCCAATATAATTAAAGATCTCTGGTTAAGCTCATTCT
ACATCTGAGCTGAGTTTAGAACCTTAAGCTGAATATTTCTACAACTCGCA
CTACCGGAATACAAAGGATATAGATGCTATACTCCCTTGCCCATATATTT
TATTTATTTTTCCCTTTATATCTTCCTCCCCCACCCTTCTCCTTTTCCCT
TCCTATACCTTCCCTTCTCTCTTTTTTCCCTTATATTATCCCCTTCCTTC
TCTATTCCATTTTTATTTCCCTCCCTTTTTTATTTTTTTCCCTTTCTTAT
TCTTATCTATATTTTTTTTTTTCCCTCTTTTTCCCCTTCTCCTTTTCTTC
CTTATAAGTCTACCCCTTTCCATATTTTTACTTCTATACCCTCTTCTCCC
TCTTTTTTTTTTTTCTTCCCCCCCTTTTTTTTCCTTCTCCTCCCTCCTTT
TTATTTCGCCCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d06.b1 MSMg01no359_d06.b1 CHROMAT_FILE:
MSMg01no359_d06.b1 PHD_FILE: MSMg01no359_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:39 2005
         (441 letters)



>mm_chr14_81085759_81086599
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaacctgtgcaaataactttgctggttttgcttttaaagaggtatacagttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcaagaacctgtgcaaataactttgctggttttgcttttaaagaggtatacagttt 582

                                                                       
Query: 65  tatttaaacgaatagttcagttttaaattttgtgtcataactaagctaatatcagctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tatttaaacgaatagttcagttttaaattttgtgtcataactaagctaatatcagctctc 522

                                                                       
Query: 125 aatccttatcctaacagctctcagagcacattgttttcttattttttctttttcccagga 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 521 aatccttatcctaacagctctcagagcacattgttttattattttttctttttcccagga 462

                                                                       
Query: 185 gggaatgggatcattgccttgtcagacacagaaataccatcagccaatataaacctgatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggaatgggatcattgccttgtcagacacagaaataccatcagccaatataaacctgatt 402

                                                                       
Query: 245 taatcctcttacctagaacatgtgggattagggatgggcagatgtggcctgacaggagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taatcctcttacctagaacatgtgggattagggatgggcagatgtggcctgacaggagga 342

                                                                       
Query: 305 ttatgacacaatttacaaataattgcaggtaactcagtcactgtgaattcaaactatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttatgacacaatttacaaataattgcaggtaactcagtcactgtgaattcaaactatttg 282

                                                                       
Query: 365 cctgtgaacttcaagcatgccttaagatagcaagaaaaatgggtttgagctcttaatggg 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cccgtgaacttcaagcatgccttaagatagcaagaaaaatgggtttgagctcttaatggg 222

                            
Query: 425 cttcttgttaccttatc 441
           |||| ||||||||||||
Sbjct: 221 cttcctgttaccttatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_d06.g1 MSMg01no359_d06.g1 CHROMAT_FILE:
MSMg01no359_d06.g1 PHD_FILE: MSMg01no359_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:39 2005
         (294 letters)



>mm_chr14_80905184_80905877
          Length = 694

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaaagcctcacatggcaccattgatgcccacacctttcagaggcaaaagtcacactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaaagcctcacatggcaccattgatgcccacacctttcagaggcaaaagtcacactc 260

                                                                       
Query: 61  tctccctttgcttacagttgtaacctagacctgcagggcagtttctcctgcactcattga 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 261 tctccctttgcttacagttgtaacctggacctgcagggcagtttctcctgtactcattga 320

                                                                       
Query: 121 tcacatacatatggggcattaaacccgtttaaaactatgtgctgtccaaacctgctccca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tcacatacatatggggcattaaacccgtttaaaactatgggctgtccaaacctgctccca 380

                                                                       
Query: 181 tgagtttgtgactctatactggtttttgttgctgttgttatttatttgtttatttattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtttgtgactctatactggtttttgttgctgttgttatttatttgtttatttattta 440

                                                              
Query: 241 tttatttatttttgccaatataattaaagatctctggttaagctcattcta 291
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tttatttatttttgccaatataattaaagatctctgggtaagctcattcta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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