BAC Information

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BAC

Clone NameMSMg01-359D12
Chromosome14 (Build37)
Map Location 31,632,758 - 31,633,213
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
Downstream geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D12.T7 (MSMg01no359_d12.b1)MSMg01-359D12.TJ (MSMg01no359_d12.g1)
ACCAG468685AG468686
length749744
length of high quality
(start - end)		518 (49 - 566)459 (58 - 516)
definitionCHROMAT_FILE: MSMg01no359_d12.b1 PHD_FILE: MSMg01no359_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005CHROMAT_FILE: MSMg01no359_d12.g1 PHD_FILE: MSMg01no359_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG
GCAAGAAAACATCTTCAACAAAATCATAGAAGAAAATTTCCCTAACCTAA
AGATGGTCATAAATGTACAAGCCTATAGAACATCAAATAGATTGGACCAG
AAAAGAAAAATCCTCTCGTCACATAATAATCAAAACACTAAATGCACAGA
ACAAAGAAAGAATATTAAAATCTGTAAGGGAAAAAGGCCAAGTAACATAT
AAAGGTGCCATTGGAATTACACCAGACTTCTCAACAGAGACTCTAAAAGC
CATAAAATCCTGGGCAGATGCCATCCAGACCCTAAGAGAATACAAAAGCC
AGCCCAGGCTACTATACCCAACAAAACTCTCAATCACCATAGATGGAGAA
ACCAAGATATTCCGTGACAAAACCCAATTTAAACAATATCTTTCTACTAA
TCCAGTCCTATAGAAAATACTAGAACACAGTCTCCAACACAAGAAGGGTA
ACTACACCAAAGAAAACACAAGAAATTAAACATGTCACAACAAACAAAAG
AAGAGGAACACACACACNCACAGTATCACCTCCCGCAACAAAATAACAGG
AACTAACAATCATTTGTCTTTAATATCTGTCCACATCAGTGGACTCAATT
CCCCATAAAAAGACACAGGTTACCAGACTAGATGCCTAAACCGGAACCCG
CATTTTGTTGCATAAAGGAAAAAAACTTGGGGCTGGAAAAAAGCGTCAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTTCTTCATTGGATAACCATCTAACGAAGTCTGAAAGCAGTA
GCTCTTCATGTAGGGACCAATAGGAGTATCTGGGAGGAAGCTCCATTTAC
GTAATGGTTCATTTATTTGAGCTTACTTAGAGATCCATCTTCTAAACATG
TGATTCTTTCATGCCATGAAGAGAAGCAGACGTGATACTAGGAAACGGTA
TTGGCAGACTGACAAGCCGTGGCTCTCTTCATAGAATCTCCTGAGACTGA
AGGAGTTGAGTCACCGATACAAAGGGAGTCTTGTGAGGACATAAAACCTA
TGCCTGTAGGATCTCACATTGTTACCTTAGTAAAATGAAAGGTGACAGCA
GTGGCTGTAACTTACTCTCTTCTTGACTCAGATGACAGAATGTAGAACTG
TCAGAGTTGACAGGGATCGTGCCTGANAGGGGAAGCACATGACCACCCCG
CCCAAGAGGGGCTCGGGGGGGGGGGGCAGCCATAACTCTTCAGTCTCTGC
TTTCTCCTATAGAAAGGACAGTTGTGATTTAGACCAGAGGGGGCTTCCCT
AAATATTTCTTGGCCTTCTTAACGGAATGTAGGGTACCTGTAAGTCCCCT
CCCAAAATATTTTTCCCCATCCCTTTTTTAGGGAAGAGAATATTTTTTTG
AAAATTTTGTTTAGGTTTTTCTTTAACGTTTTTTTTTGCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d12.g1 MSMg01no359_d12.g1 CHROMAT_FILE:
MSMg01no359_d12.g1 PHD_FILE: MSMg01no359_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:40 2005
         (459 letters)



>mm_chr14_31632558_31633416
          Length = 859

 Score =  822 bits (425), Expect = 0.0
 Identities = 448/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcttcattggataaccatctaacgaagtctgaaagcagtagctcttcatgtagggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcttcattggataaccatctaacgaagtctgaaagcagtagctcttcatgtagggac 260

                                                                       
Query: 61  caataggagtatctgggaggaagctccatttacgtaatggttcatttatttgagcttact 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaggagtatctgggaggaagctccatttacgtaatggttcatttatttgagcttact 320

                                                                       
Query: 121 tagagatccatcttctaaacatgtgattctttcatgccatgaagagaagcagacgtgata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tagagatccatcttctaaacatgtgattctttcatgccatgaagagaagcaggcgtgata 380

                                                                       
Query: 181 ctaggaaacggtattggcagactgacaagccgtggctctcttcatagaatctcctgagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggaaacggtattggcagactgacaagccgtggctctcttcatagaatctcctgagac 440

                                                                       
Query: 241 tgaaggagttgagtcaccgatacaaagggagtcttgtgaggacataaaacctatgcctgt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggagttgagtcaccgatacaaagggagtcttgtgaggacataaaacctatgcctgt 500

                                                                       
Query: 301 aggatctcacattgttaccttagtaaaatgaaaggtgacagcagtggctgtaacttactc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 aggatcttacattgttaccttagtaaaatgaaaggtgacagcagtggctgtaacttactt 560

                                                                       
Query: 361 tcttcttgactcagatgacagaatgtagaactgtcagagttgacagggatcgtgcctgan 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 561 tcttcttgactcagatgacagaatgtagaactgtcagagttggcagggatcgtgcctgaa 620

                                               
Query: 421 aggggaagcacatgaccaccccgcccaagaggggct 456
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 621 aggggaagcacatgaccgccccgcccaagaggggct 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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