BAC Information

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BAC

Clone NameMSMg01-359E14
Chromosome14 (Build37)
Map Location 98,780,646 - 98,781,076
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359E14.T7 (MSMg01no359_e14.b1)MSMg01-359E14.TJ (MSMg01no359_e14.g1)
ACCAG468736AG468737
length774759
length of high quality
(start - end)		435 (29 - 463)419 (56 - 474)
definitionCHROMAT_FILE: MSMg01no359_e14.b1 PHD_FILE: MSMg01no359_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:45 2005CHROMAT_FILE: MSMg01no359_e14.g1 PHD_FILE: MSMg01no359_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATTTTCAAAG
ATAAAATAATTATCCAATCACTACCAAATCTATTCTTGTTTCGAACACTC
ACACCTTGGGTAATTTCTAATGATGCCGGTGATGCAGGTGCCCACCTTAA
AAAATTCAAATTCATCTGAACTAAAACTTCTCTGTCATCTTACATATTTA
AACAACTTTACCCAACAAATATGTCTGAGGTGTATCCACTATCATTGCTT
TCTCAGGGCCAAAAAGTAGGATAAATATTTTAGAGAATACAAACAATAGT
GCTAAAAATGAAGCCATTTATATTCATAGGACAGATACTCATTGGCCTTT
TGTGTGATGGTGGAGTCAGGGTGATGGGGACAAGCCATAGATCTTTTATT
TTGTTTATTTGTTTGCTTAAAGATAGGGTGTCATTATAGATCACAGGTTC
GATTTGAATTCTTGAATCTTTTCTGCCGGAGTCTTCTGACTCCTGGCATT
ATAAACTTTGTGCTACCATGCCTGGCTTTGTAATGCATAATTAATCTTTA
AAAGCCCTGAATTTTGGAAACCCTTGGAATCTGCTTTTCTGTGGTAAGGT
GCTAAAAACCAAATTTAACCCCCCCTCTAACTTACCCATCTTTAGGATAA
AAACGACTGAACCCTTTTTGCGTCTCTTGCCCCCTGAAAAACCCCGACTT
CTTAAAACTTTACACCCCCATTCATACTATTCTAAGTGTTTGAAAAGGCC
GCTTTTCTTTCCACTTTTCCATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGG
GATTGCAAGCTTGTAAAACCACTCTGGAAATAAGTCTGGTGGTTCCTCAG
AAAACTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACCGGTAAAAAGGACACATGCCCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGATGAATGGATACAGATAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAAAGAATTTATGAAATCCTAGGCAAAT
GAAAGGACCTGCGAGGCATCTTCCTGACCGATGGAACTCATCCCTAAAAA
ATTCACACCAAATGTGATTCCACAATAACGGGAAAATTATCCCTTAAACC
TATAATATACCTCTACTTTACAAACTTTTTGTCGCTTGTTCTTATTTCTC
CAAAACACTATACTCCTCGTTGGGGGCCCTTTTCCCCTTTTTTTATCGGG
ATATAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_e14.b1 MSMg01no359_e14.b1 CHROMAT_FILE:
MSMg01no359_e14.b1 PHD_FILE: MSMg01no359_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:45 2005
         (435 letters)



>mm_chr14_98780442_98781276
          Length = 835

 Score =  833 bits (431), Expect = 0.0
 Identities = 431/431 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttattttcaaagataaaataattatccaatcactaccaaatctattcttgtttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattcttattttcaaagataaaataattatccaatcactaccaaatctattcttgtttc 576

                                                                       
Query: 65  gaacactcacaccttgggtaatttctaatgatgccggtgatgcaggtgcccaccttaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaacactcacaccttgggtaatttctaatgatgccggtgatgcaggtgcccaccttaaaa 516

                                                                       
Query: 125 aattcaaattcatctgaactaaaacttctctgtcatcttacatatttaaacaactttacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aattcaaattcatctgaactaaaacttctctgtcatcttacatatttaaacaactttacc 456

                                                                       
Query: 185 caacaaatatgtctgaggtgtatccactatcattgctttctcagggccaaaaagtaggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caacaaatatgtctgaggtgtatccactatcattgctttctcagggccaaaaagtaggat 396

                                                                       
Query: 245 aaatattttagagaatacaaacaatagtgctaaaaatgaagccatttatattcataggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaatattttagagaatacaaacaatagtgctaaaaatgaagccatttatattcataggac 336

                                                                       
Query: 305 agatactcattggccttttgtgtgatggtggagtcagggtgatggggacaagccatagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agatactcattggccttttgtgtgatggtggagtcagggtgatggggacaagccatagat 276

                                                                       
Query: 365 cttttattttgtttatttgtttgcttaaagatagggtgtcattatagatcacaggttcga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttttattttgtttatttgtttgcttaaagatagggtgtcattatagatcacaggttcga 216

                      
Query: 425 tttgaattctt 435
           |||||||||||
Sbjct: 215 tttgaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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