BAC Information

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BAC

Clone NameMSMg01-359L12
Chromosome14 (Build37)
Map Location 78,166,999 - 78,348,525
singlet/doubletdoublet
Overlap geneGm1587, Dnajc15, Epsti1
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneAU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359L12.T7 (MSMg01no359_l12.b1)MSMg01-359L12.TJ (MSMg01no359_l12.g1)
ACCAG469067AG469068
length746745
length of high quality
(start - end)		420 (30 - 449)357 (58 - 414)
definitionCHROMAT_FILE: MSMg01no359_l12.b1 PHD_FILE: MSMg01no359_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:16 2005CHROMAT_FILE: MSMg01no359_l12.g1 PHD_FILE: MSMg01no359_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,348,112 - 78,348,525)(78,166,999 - 78,167,355)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAAAGTGGTT
CCCAGGTGGAGGCAGCCAAGCCTCCACTGAGAAATTTGCACAAGTGTAAC
ACAGTCTGCTCTCCTTATCGCAAGGCCTGAGCAGTGGGGTCCCCACACGG
CAAGGACCTATGAGCATATCAGTGCAGACTGTCCTGGCCTTTTCTGAGAC
AGTGCTTGATTCACTTTTGCCCCCCACCCCTTGCATTCTTGGCTTTGCTA
TTGGAAGTCTTTGCTTTCACTTTATCTACGACAAACATTTTCCCAGAACC
AGAACAAGGAAGATCAAACTATGATTCATTCTTGTTTGTCTCTGAGGATT
GTGGGAGTTTGTTAATAACACTGATGTGATTGAGTCAACACAACGCCCTA
GTCTGGGTACATCAGCTAACATCTGGATGCTCTCTTCTGATGGAAACTTA
GTTCAAGCGACAATTTGCCCACCAACCTCTTCCAAATAACCTTATTTGAT
TATTAAAATGTTACAAAGAACTCCCTGAACCACTGGGATCACTCAAAGGT
GACCCACCCCGTGACTCCCGTTTCTACTTCGTTGATAGCCCTGAATTTTC
AAGATTATATTTCTTGCTCACCCCATTCTTTTTCTCTTTATACTCCTCGT
TCCCTCTATCCTCCCTTTGTATTTATTCTCTCTTCTCCCTAAACTATGAT
CCCCCCCTTTTTTATCCCCGCCTCTTTCCTATTCTTTTATCCCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCATTAGGAAGCTAGACAGATGTCAGAGGGCTTGGAGGCCA
TTGAGATGGACCCTGCCTCCTGTTTCCTTGGAAACTCTAGAAAAGGAAAA
TCCTTAGCATTTAAATGAGCATAGGACAAGTTGGAGGAATCCAGGCTTCT
GTGAGGCTCTTTAAGGCAAAGCACTCTTCCTGCTAAGAAGAGCAAATCTA
AGATCTACCTCTGGCCATGCGTGTAGACCTGACATCCCAAGGTACCCCAA
CCATTACACACTATCATTTTTTTCTCCTTTTAAAAGTACATGGCTAAACG
AGGCCATGACTGCTCCTAGGTATGGTTGAGGAGAAGATATATTGTAGATA
TAAGACATCTGGAAGAATCTAGAGCCTGAACTGGGCCAGCAGTATGAACT
GGGTCATATAACGATAGGCGTTACACTTACGAGAGCTACTTTACATTCAT
TACCGTCCCCTACTCACTTCTTTCCCTTTTCTTTTCCTTTCCTCTCCTTC
TTCTTTTTTTTCTCCCCCCCATCTTTTTTTTTCCCTTTCCTTCTCCTCTT
TTTTTTTTTTTTTCCCTTTTCTCCCCTTTTTTTTCTTTCCTTTTTCTCCT
CCCCTTCGCTATTTTTCCTCTAGCCCCCTCTCCCTTTTTTTTTTTTTTTT
CCCCCCTCTCTTTTTCCTTCTCCCCCCCCTTTTTTTCCCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_l12.b1 MSMg01no359_l12.b1 CHROMAT_FILE:
MSMg01no359_l12.b1 PHD_FILE: MSMg01no359_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:16 2005
         (420 letters)



>mm_chr14_78347906_78348725
          Length = 820

 Score =  692 bits (358), Expect = 0.0
 Identities = 400/414 (96%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcaaaaagtggttcccaggtggaggcagccaagcctccactgagaaatttgcacaagt 66
           ||||||||||||||||||||||||||||  ||||   ||||||||||||||||||| |||
Sbjct: 620 attcaaaaagtggttcccaggtggaggctcccaaatttccactgagaaatttgcacgagt 561

                                                                       
Query: 67  gtaacacagtctgctctccttatcgcaaggcctgagcagtggggtccccacacggcaagg 126
           ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 560 gtaacgcagtctgctctccttatggcaaggcctgagcagtggggtccccacatggcaagg 501

                                                                       
Query: 127 acctatgagcatatcagtgcagactgtcctggccttttctgagacagtgcttgattcact 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acctatgagcatatcagtgcagactgtcctggccttttctgagacagtgcttgattcact 441

                                                                       
Query: 187 tttgccccccaccccttgcattcttggctttgctattggaagtctttgctttcactttat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgccccccaccccttgcattcttggctttgctattggaagtctttgctttcactttat 381

                                                                       
Query: 247 ctacgacaaacattttcccagaaccagaacaaggaagatcaaactatgattcattcttgt 306
           || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgcaacaaacatttccccagaaccagaacaaggaagatcaaactatgattcattcttgt 321

                                                                       
Query: 307 ttgtctctgaggattgtgggagtttgttaataacactgatgtgattgagtcaacacaacg 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 ttgtctctgaggattgtgggagtttgttaataacactgatgtgattgagtcaacacaaag 261

                                                                 
Query: 367 ccctagtctgggtacatcagctaacatctggatgctctcttctgatggaaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 ccctagtctgggtacatcagctaacatctggatgctctcttctgatgtaaactt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_l12.g1 MSMg01no359_l12.g1 CHROMAT_FILE:
MSMg01no359_l12.g1 PHD_FILE: MSMg01no359_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:16 2005
         (357 letters)



>mm_chr14_78166799_78167555
          Length = 757

 Score =  675 bits (349), Expect = 0.0
 Identities = 355/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcattaggaagctagacagatgtcagagggcttggaggccattgagatggaccctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcattaggaagctagacagatgtcagagggcttggaggccattgagatggaccctgcc 260

                                                                       
Query: 61  tcctgtttccttggaaactctagaaaaggaaaatccttagcatttaaatgagcataggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgtttccttggaaactctagaaaaggaaaatccttagcatttaaatgagcataggac 320

                                                                       
Query: 121 aagttggaggaatccaggcttctgtgaggctctttaaggcaaagcactcttcctgctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttggaggaatccaggcttctgtgaggctctttaaggcaaagcactcttcctgctaag 380

                                                                       
Query: 181 aagagcaaatctaagatctacctctggccatgcgtgtagacctgacatcccaaggtaccc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagagcaaatctaagatctacctctggccatgcgtgtagacctggcatcccaaggtaccc 440

                                                                       
Query: 241 caaccattacacactatcatttttttctccttttaaaagtacatggctaaacgaggccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccattacacactatcatttttttctccttttaaaagtacatggctaaacgaggccat 500

                                                                    
Query: 301 gactgctcctaggtatggttgaggagaagatatattgtagatataagacatctggaa 357
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gactgctcctaggtatggttgaggagaagatatattgtagatatgagacatctggaa 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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