Query= MSMg01no360_e09.b1 MSMg01no360_e09.b1 CHROMAT_FILE:
MSMg01no360_e09.b1 PHD_FILE: MSMg01no360_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:59 2005
(500 letters)
>mm_chr14_111862421_111863320
Length = 900
Score = 822 bits (425), Expect = 0.0
Identities = 482/506 (95%), Gaps = 12/506 (2%)
Strand = Plus / Minus
Query: 1 cagagagagatagagatagagagagacagagagactgagaaagacagagac----agaga 56
||||||||||||||||||||||||| |||||||| || |||||||||| |||||
Sbjct: 688 cagagagagatagagatagagagag--agagagac--ag--agacagagacagatagaga 635
Query: 57 cagagacagag--agagatttgtaaaataaacacacacaatttatttgatgatattcaaa 114
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cagagacagagacagaaatttgtaaaataaacacacacaatttatttgatgatattcaaa 575
Query: 115 ctttatcttcagtagtaactgaaatttaaggattggaaacacagttcaaagtggagagga 174
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 574 ctttatcttcagttgtaactgaaatttaaggattggaaacacagtccacagtggagagga 515
Query: 175 cagtgctttaatggttagaagaattttggaaaagtttaatatcagctatttttcccattc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cagtgctttaatggttagaagaattttggaaaagtttaatatcagctatttttcccattc 455
Query: 235 tctgtgttaatctggttatttcagttggagctattggaaaattttccccagtatattttt 294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctgtgttaacctggttatttcagttggagctattggaaaattttccccagtatattttt 395
Query: 295 tcattttagtaaatatgaaaaatatgggaataatataaaacaaacattttattttactat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcattttagtaaatatgaaaaatatgggaataatataaaacaaacattttattttactat 335
Query: 355 ttcctaaggcaacctgactggattatagttattttttcaatttcttcttttttattanat 414
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 334 ttcctaaggcaacctgactggactatagttattttttcaatttcttcttttttattaaat 275
Query: 415 attttatttatttatatcccaaacgttgcctcccatggtcccttcaagagttcttacccc 474
||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||
Sbjct: 274 attttatttatttatatcccaaatgtcgcctcccatggtcactccaagagttcttacccc 215
Query: 475 atccccccttctcctctgaaagattg 500
||||||| ||||||||||||||||||
Sbjct: 214 atccccctttctcctctgaaagattg 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_e09.g1 MSMg01no360_e09.g1 CHROMAT_FILE:
MSMg01no360_e09.g1 PHD_FILE: MSMg01no360_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:59 2005
(499 letters)
>mm_chr14_111705182_111706080
Length = 899
Score = 934 bits (483), Expect = 0.0
Identities = 495/499 (99%)
Strand = Plus / Plus
Query: 1 aatgaacagtacaaatcaaatgagaatattatgtgcttttcattataattattttatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aatgaacagtacaaatcaaatgagaatattatgtgcttttcattataattattttatagt 260
Query: 61 catcttgaagatcattcagctagtgggcccatttatctactacgagaatagtgtattgga 120
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 catcttgaagatcatccagctagtgggcccatttatctactatgagaatagtgtattgga 320
Query: 121 atacaatattctgaattagaaaacatagaatgattcatgagtaagtgctgggaatatatc 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 atacaatattctgaattagaaaacatagaatgattcatgaataagtgctgggaatatatc 380
Query: 181 tacaaataggagaggagtagttattaaaatataataaattctatttagagcatatgttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaaataggagaggagtagttattaaaatataataaattctatttagagcatatgttta 440
Query: 241 gagcacatgtatgcatgtgttctcagggctgaacatttagcattgtgtaaccaactggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcacatgtatgcatgtgttctcagggctgaacatttagcattgtgtaaccaactggtg 500
Query: 301 ccctcttccatgggaaaatctatctcttatgctctcagcattccttagatttccatggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctcttccatgggaaaatctatctcttatgctctcagcattccttagatttccatggtt 560
Query: 361 cttagtctaaatatgaggccatcttatcttctcccagtcccattagaatatctcttgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagtctaaatatgaggccatcttatcttctcccagtcccattagaatatctcttgttg 620
Query: 421 tctttttcctgctcagatttagaaagtcataatggtaagaacttataaggatggattcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttttcctgctcagatttagaaagtcataatggtaagaacttataaggatggattcta 680
Query: 481 acattactagaaaatacaa 499
|||||||||||||||||||
Sbjct: 681 acattactagaaaatacaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
