BAC Information

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BAC

Clone NameMSMg01-361P19
Chromosome14 (Build37)
Map Location 107,723,286 - 107,723,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361P19.T7 (MSMg01no361_p19.b1)MSMg01-361P19.TJ (MSMg01no361_p19.g1)
ACCAG470781AG470782
length752754
length of high quality
(start - end)
644 (47 - 690)544 (78 - 621)
definitionCHROMAT_FILE: MSMg01no361_p19.b1 PHD_FILE: MSMg01no361_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:11 2005CHROMAT_FILE: MSMg01no361_p19.g1 PHD_FILE: MSMg01no361_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAATGGTATTTACAATTTTTCTTTACTCCTTTGCTTGTTGATA
GCTCTTTATATATGAGTACCTACAATAATAAACATTTTATTCATTTATTA
TATGCAAAATAAATATATACTTTAATATTTAGTCATGTTTCCCAAAATTT
CTGCACTGACATGTCAAGCCAAAGCTGTCACTTGAGTAAGAGTGAGACAT
GTATTAGCACTATGCACTAAATGTGGGCATATTTTGAAATGCTATGTGCT
GTAGGACAAAATATCTTCAGAAACAGCACTCTATTCTTTGTGTCACAACA
CACTTGTTGGTTATAAGTGAGTGGGCAGTAAGAGGTGGCACTAAGGGCTC
CTTTTTTCCTGCAGCATCTTGGAGTTGAGTAAAAATGGACCAGGGCAGAG
AATCTAGAGGCTCCGAGTCTGCTTTTAGTAACTTGACGTTTATAAGGCCA
TCTGAAAGTAGGAACCTATCATCAGCTTAAAGAACTCATTCATACTCAGT
AACCAGGACCAGTGCAAGAGTCAAGAATGAGGAAAAACCGATATATATAT
TACATATTTTCCTCAATTACATTTCCAAAGCTATCTCAAAAGTCTCCCAT
AACCTCCCCTCCCCCACTTCCCTACCCACCCATTCCCATGTTTTTGGCCC
TGTCATTCCCCTGTACTGGCATATATCAAGTTTTCATGTTCCATGGCCCT
CC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAACAAATGGAGATTCTCCA
CAGATACTTAAAAGTTACACTCATACAAGAAATTATCAGGGCCCAGGAAA
TAGGGGGGTTGTGGTATTGCAGTATTCATGAGAAGGTCTGCTAGAGCAGA
ATCCCTGGTGGTGGGCTTAACAATAGACTAGCTTTACACCTGAAACCCTT
CTTAGTGGCAGTGGCCTGGTCCCTGCTTTCTTTTGATGTATACATTCCTT
TTGTATTGTGTCACTGTAACTTGGTGAAAGTATCTTGCCTGGTTTCTTGT
TATTCTTCTTATAAAATGTTTGATGCTCAACTTGACAAATTACATTCAGA
TTCTACACAATCTCCTATGTGCATCTGTCATTCCCACCGACTCCTTGCCC
ACCTGCAACTAGAAACCCTTTCCATGCAGACAAAGGGACCCAGAGTGGAC
CGGGTCTCTAGTCGTGGGTGGGCAAAGCGTCGGATGAATTGACAGACAGA
TGCACACAGGAGAGGTTGTGTTGGATCTGAATGTCTTTTGTCAAATCGAG
CATCAGATTTTTAATACTGAAGACCATACGGAAGCTGGGTGACTTACCCA
CTTAGCACTTATGACGTATCCGGATGTTTAATGACTCTTATCCAGAACAG
AGGATTGAAAACCTAATACTGGCCGAACTTGGGCTACTACCTTTTTGACA
CCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_p19.b1 MSMg01no361_p19.b1 CHROMAT_FILE:
MSMg01no361_p19.b1 PHD_FILE: MSMg01no361_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:11 2005
         (644 letters)



>mm_chr14_107723083_107724127
          Length = 1045

 Score = 1042 bits (539), Expect = 0.0
 Identities = 626/679 (92%), Gaps = 39/679 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaatggtatttacaatttttctttactcctttgcttgttgatagctctttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaatggtatttacaatttttctttactcctttgcttgttgatagctctttat 263

                                                                       
Query: 64  atatgagtacctacaataataaacattttattcatttattatatgcaaaataaatatata 123
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 atatgagtgcctacaataataaacattttatttatttattatatgcaaaataaatatata 323

                                                                       
Query: 124 ctttaatatttagtcatgtttcccaaaatttctgcactgacatgtcaagccaaagctgtc 183
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttaatatttagtcacatttcccaaaatttctgcactgacatgtcaagccaaagctgtc 383

                                                                       
Query: 184 acttgagtaagagtgagacatgtattagcactatgcactaaatgtgggcatattttgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttgagtaagagtgagacatgtattagcactatgcactaaatgtgggcatattttgaaa 443

                                                                       
Query: 244 tgctatgtgctgtaggacaaaatatcttcagaaacagcactctattctttgtgtcacaac 303
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 444 tgctatgtgctgtaggacaaaatatcttcagaaacagcagtctactctttgtgtcacaac 503

                                                                       
Query: 304 acacttgttggttataagtgagtgggcagtaagaggtggcactaagggctcctttttt-c 362
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 acactcgttggttataagtgagtgggcagtaagaggtggcactaagggctcctttttttc 563

                                                                       
Query: 363 ctgcagcatcttggagttgagtaaaaatggaccagggcagagaatctagaggctccgagt 422
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 ctgcagcatcttggagttgagtaaaaatggaccagggcagagaatctagatgctccgagt 623

                                                                       
Query: 423 ctgcttttagtaacttgacgtttataaggccatctgaaagtaggaacctatcatcagctt 482
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 ctgcttttagtaacttgacgtttataaggccatctgaaagtaggaacctagcatcagctt 683

                                                                       
Query: 483 aaagaactcattcatactcagtaaccaggaccagtgcaagagtcaagaatgaggaaaaac 542
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaagaactcactcatactcagtaaccaggaccagtgcaagagtcaagaatgaggaaaaac 743

                                                                       
Query: 543 c----------------------------g----------atatatatattacatatttt 564
           |                            |          ||||||||||||||||||||
Sbjct: 744 caatatatatatatatatattacatatatgtatatattatatatatatattacatatttt 803

                                                                       
Query: 565 cctcaattacatttccaaagctatctcaaaagtctcccataacctcccctcccccacttc 624
           |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 804 cctcaattacatttccaatgctatctcaaaagtcccccataacctcccttcccctacttc 863

                              
Query: 625 cctacccacccattcccat 643
           |||||||||||||||||||
Sbjct: 864 cctacccacccattcccat 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)