Query= MSMg01no362_k16.b1 MSMg01no362_k16.b1 CHROMAT_FILE:
MSMg01no362_k16.b1 PHD_FILE: MSMg01no362_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:07 2005
(291 letters)
>mm_chr14_58515885_58516573
Length = 689
Score = 524 bits (271), Expect = e-153
Identities = 281/285 (98%), Gaps = 2/285 (0%)
Strand = Plus / Minus
Query: 5 gaattccaccacggaggacttgtaataaaaggttagcaacagaagagcgtccagatgtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaattccaccacggaggacttgtaataaaaggttagcaacagaagagcgtccagatgtat 428
Query: 65 ttactattatgttttatgtgacacggagcctttagaagtgaatgtccaaacagggaagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttactattatgttttatgtgacacggagcctttagaagtgaatgtccaaacagggaagcc 368
Query: 125 cgtctgtttttacggatgcgattggaagagaaaaggtgtgatttaatggtaataaaacag 184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgtctgtttttac--atgcgattggaagagaaaaggtgtgatttaatggtaataaaacag 310
Query: 185 gagcttagcaaggcctgtctgttcagatgcctcatggaatctccatgtctcctgggttaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309 gagcttagcaaggcctgtctgttcagatgcctcatggaatctccatgtctcctgggctaa 250
Query: 245 tggtttcttttcctgtggttcaaggagggccctctagtgtggggg 289
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 tggtttcttttcctgtggttcaaggaggaccctctagtgtggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space: 191760
Effective search space used: 191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no362_k16.g1 MSMg01no362_k16.g1 CHROMAT_FILE:
MSMg01no362_k16.g1 PHD_FILE: MSMg01no362_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:07 2005
(487 letters)
>mm_chr14_58321980_58322866
Length = 887
Score = 880 bits (455), Expect = 0.0
Identities = 476/487 (97%), Gaps = 8/487 (1%)
Strand = Plus / Plus
Query: 1 aattctcagcaaacacgtggtagctcacaactatctatagtggggtctgatgccttcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aattctcagcaaacacgtggtagctcacaactatctatagtggggtctgatgccttcttc 268
Query: 61 gggaatgcaggtatacatgcagacagagcactcacaggaaggaatgaaggaatgaaggaa 120
||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 269 gggcatgcaggtatacatgcagacagagcactcacaggaaggaatgaa-----ga---aa 320
Query: 121 cgaagggagggagggaggaactttagtgactggcttggtggatccagactgaagctacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaagggagggagggaggaactttagtgactggcttggtggatccagactgaagctacga 380
Query: 181 agacacgttaccttagagaaggagatcccagttcacctctgtgctaactctgggatccct 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaggttaccttagagaaggagatcccagttcacctctgtgctaactctgggatccct 440
Query: 241 ggaaatgcatggatgggcacatttatgagacatttactgaatgcctcctgttgacaacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaatgcatggatgggcacatttatgagacatttactgaatgcctcctgttgacaacgt 500
Query: 301 cctctgctatctgcagcagttaaggagttgcccaagacagtcgtcatgaagcccctggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctgctatctgcagcagttaaggagttgcccaagacagtcgtcatgaagcccctggag 560
Query: 361 ctctgtccacatccatacagctctgtcccctaaaagtgtttgcagaatgaacacacaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgtccacatccatacagctctgtcccctaaaagtgtttgcagaatgaacacacaaca 620
Query: 421 ggagagggcagtgacgttaccgtgaattgaaaagatggttcccgtctacccagggaaagc 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagagggcagtgacattaccgtgaattgaaaagatggttcccgtctacccagggaaagc 680
Query: 481 atagatc 487
|||||||
Sbjct: 681 atagatc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
