Query= MSMg01no363_d20.b1 MSMg01no363_d20.b1 CHROMAT_FILE:
MSMg01no363_d20.b1 PHD_FILE: MSMg01no363_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:53 2005
(556 letters)
>mm_chr14_36861245_36862205
Length = 961
Score = 1019 bits (527), Expect = 0.0
Identities = 548/557 (98%), Gaps = 5/557 (0%)
Strand = Plus / Plus
Query: 5 gaattctacatctaatcactccaataattaactgctgctactattacaaaaatagacgag 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatttaagcactccaataattaactgctgctactattacaaaaatagacgag 264
Query: 65 caaatattacagtttcttataaaatatttaaatatatgtagaaattaatcttgaccccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaatattacagtttcttataaaatatttaaatatatgtagaaattaatcttgaccccac 324
Query: 125 aaaaatcagttctaattcctagcagtcctgcagattgatttagtaaagatgtggagatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaatcagttctaattcctagcagtcctgcagattgatttagtaaagatgtggagatca 384
Query: 185 aatataacacgtttgccaacagatgttcaataacataactggggtgtcatgagcagaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatataacacgtttgccaacagatgttcaataacataactggggtgtcatgagcagaatt 444
Query: 245 caacttgtagaagctgcacaggaaaaaatggagaatttt-ttttgcatgtaaatgacagc 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 caacttgtagaagctgcacaggaaaaaatggagaattttcttttgcatgtaaatgacagc 504
Query: 304 taagggtagcagcaagtgatttagaggaacctgaacatgaaaggcatggatttactaatg 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 taagggtagcagcaagtgatttagaggaacctgaacctgaaaggcatggatttactaatg 564
Query: 364 taacgtgtgcagcttatcttcacatcagttgaaagagcataatgctcaaagtaagtttgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taacgtgtgcagcttatcttcacatcagttgaaagagcataatgctcaaagtaagtttgt 624
Query: 424 cttacaaattcaagatgttaaagggcattaaaaattagcaatttaa----caaattaaga 479
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 cttacaaattcaagatgttaaagggcattaaaaattagcaatttaattaacaaattaaga 684
Query: 480 ggataaaataaaagtccatgatctccttgccagtatttgatgacattttgtagggggagg 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 ggataaaataaaagtccatgatctccttgccagtatttgatgacgttttgtagggggagg 744
Query: 540 agctgatactaaaatct 556
|||||||||||||||||
Sbjct: 745 agctgatactaaaatct 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 961
Length adjustment: 10
Effective length of query: 546
Effective length of database: 951
Effective search space: 519246
Effective search space used: 519246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_d20.g1 MSMg01no363_d20.g1 CHROMAT_FILE:
MSMg01no363_d20.g1 PHD_FILE: MSMg01no363_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:53 2005
(460 letters)
>mm_chr14_37017333_37018193
Length = 861
Score = 774 bits (400), Expect = 0.0
Identities = 433/448 (96%), Gaps = 10/448 (2%)
Strand = Plus / Minus
Query: 18 taaaatttgtttttaattgtgaagaaattccatgaccaagagcaacctaaagaagatcac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taaaatttgtttttaattgtgaagaaattccatgaccaagagcaacctaaagaagatcac 802
Query: 78 atctcaaacccacacaggaagcacagagagaatagtgagtaccagctagctataaaaact 137
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 801 atctcaaacccacacaggaagcacggagagaatagtgagtacaagctagctataaaaact 742
Query: 138 caaagcccgccctcatttacatgctttctccaggaggtggcacctcctacagtttccaaa 197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaagcccgccctcagttacatgctttctccaggaggtggcacctcctacagtttccaaa 682
Query: 198 accttcccaaacattcctgggaccaggtctttaaatacaccagtctatcgaagacatttc 257
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 681 accttcccaaacattcctgggaccaggtctttaaatacaccagtctatcaaaggcatttc 622
Query: 258 ttccttaatctttaacattgtccttctccctgaacttatcaggaacatttcccacctgct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccttaatctttaacattgtccttctccctgaacttatcaggaacatttcccacctgct 562
Query: 318 ctactgcaaaattggccattgaactaaagagcgcagtgatgac-ttacagcaaaggctga 376
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ctactgcaaaattggccattgaactaaagagcgcagtgatgactttacagcaaaggctga 502
Query: 377 gagagtgttccaaagattcatccttctcaaagactgagaccctgt-------ttttttt- 428
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gagagtgttccaaagattcatccttctcaaagactgagaccctgtttttttgtttttttg 442
Query: 429 tttttttctgtttttggttttttttttg 456
||||||||||||||| ||||||||||||
Sbjct: 441 tttttttctgttttt-gttttttttttg 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
