Query= MSMg01no363_n09.b1 MSMg01no363_n09.b1 CHROMAT_FILE:
MSMg01no363_n09.b1 PHD_FILE: MSMg01no363_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:41 2005
(585 letters)
>mm_chr14_110875519_110876503
Length = 985
Score = 1011 bits (523), Expect = 0.0
Identities = 562/581 (96%), Gaps = 13/581 (2%)
Strand = Plus / Minus
Query: 6 tgctactcggggtaggtatgtgcagaggcctaagcggacacttcactgattcctattaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 tgctactcggggtaggtatgtgcagaggcctaagcggacacttcactgattcctattaac 926
Query: 66 aagtaaatttcatggaacagaaaagatttttttctctgtttttggcatttaagtttttcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aagtaaatttcatggaacagaaaagatttttttctctgtttttggcatttaagtttttcc 866
Query: 126 ccttaaatagatgtccagaaagaaaaaagatagcggctttataaaatgagtgtatgtgta 185
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 865 ccttaaatagatgtccagaaagaaaaaagatagcggctttataaaatgtgtgtatgtgta 806
Query: 186 tgtatatccacacacattaatatttacatttatatatgtatatgtacacacacacatttt 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtatatccacacacattaatatttacatttatatatgtatatgtacacacacacattt- 747
Query: 246 atatatatatatatatgtatatgagagactgatcaatggtcatgttttctctttcttcct 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ---tatatatatatatgtatatgagagactgatcaatggtcatgttttctctttcttcct 690
Query: 306 ctcactcttgtagactctcctctttacaaatttcacacagactactcttcattttgattt 365
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 689 ctcactcttgtagactctcctctttacaaatttctcaccggctactcttcattttgattt 630
Query: 366 gtgttactctctgccttctaggaagcccctgttttcagacca-tcctgttaacttactat 424
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct: 629 gtgttactctctgccttctaggaagcccctgttttcaga-cagtccagttaacttactat 571
Query: 425 gtaccatattccttttcattttctattaacaatatttatattaccagatattttacataa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtaccatattccttttcattttctattaacaatatttatattaccagatattttacataa 511
Query: 485 actttgaaattagttggatagtctgactattgtttagaataaggaataagcacagaagat 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 510 actttgaaattagttggatagtctgactattgttta-------gaataagcacagaagat 458
Query: 545 ggtattgaagaacacatctgatatagacatgtattctacag 585
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 ggtattgaagaacacatcagatatagacatgtattctacag 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_n09.g1 MSMg01no363_n09.g1 CHROMAT_FILE:
MSMg01no363_n09.g1 PHD_FILE: MSMg01no363_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:41 2005
(241 letters)
>mm_chr14_110681196_110681835
Length = 640
Score = 408 bits (211), Expect = e-118
Identities = 234/247 (94%), Gaps = 10/247 (4%)
Strand = Plus / Plus
Query: 1 cttctgcattcctatctctgcttactgaatgtgtgtccaatatgagttgttatcttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cttctgcattcctatctctgcttactgaatgtgtgtccaatatgagttgttatcttaaac 251
Query: 61 tgtcatagaatgtctttgaacttacatggcaaaataatagttgctttcttaggagttttt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtcatagaatgtctttgaatttacatggcaaaataatagttgctttcttaggagttttt 311
Query: 121 ttttt---------gggggggtggagaagggtctatagcaacaggagtagacattaatta 171
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 ttttttttttttttgggggggggga-aagggtctatagcaacaggagtagacattaatta 370
Query: 172 agactaatggtacctacaagtgggcctattctgtgacagaactggttttgtgatgtatat 231
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agacaaatggtacctacaagtgggcctattctgtgacagaactggttttgtgatgtatat 430
Query: 232 gcctttg 238
|||||||
Sbjct: 431 gcctttg 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space: 146392
Effective search space used: 146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
