Query= MSMg01no363_p10.b1 MSMg01no363_p10.b1 CHROMAT_FILE:
MSMg01no363_p10.b1 PHD_FILE: MSMg01no363_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:52 2005
(524 letters)
>mm_chr14_116643027_116643951
Length = 925
Score = 770 bits (398), Expect = 0.0
Identities = 407/410 (99%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 1 agtcctatcaattttctttcacaaaaatatgtttgccccagagtttacgacttttaattt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 410 agtcctatcaattttctttcacaaaaatatgtttgccccagagtttaggacttttaattt 351
Query: 61 tcactaaaacactatagtaaaatcatgatacaaccttgttatacaagttccaaagcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcactaaaacactatagtaaaatcatgatacaaccttgttatacaagttccaaagcaaaa 291
Query: 121 caacaattaaaattacatgtagg-aaaaatgattttgtacatgaataaaacaatatagta 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 290 caacaattaaaattacatgtaggaaaaaatgattttgtacatgaataaaacaatatagta 231
Query: 180 taatatttacttataaagactatattggtcatttaattattactttacttatatgagtat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 taatatttacttataaagactatattggtcatttaattattactttacttatatgagtat 171
Query: 240 agtatagctatcttcaaacacagaacaggtattgaatccctgtcacagatgcttgtgaga 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 170 agtatagctatcttcaaacacagaacaggtattggatccctgtcacagatgcttgtgaga 111
Query: 300 taccatgtagtggtgggaattgaactcaggacctctggaagagcagtcagtgcttttaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 taccatgtagtggtgggaattgaactcaggacctctggaagagcagtcagtgcttttaaa 51
Query: 360 ccctgagtcatctctctagccctggtcatgtcctccttataatggttatg 409
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ccctgagtcatctctctagccctggtcatgtcctccttataatggttatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_p10.g1 MSMg01no363_p10.g1 CHROMAT_FILE:
MSMg01no363_p10.g1 PHD_FILE: MSMg01no363_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:52 2005
(590 letters)
>mm_chr14_116505909_116506898
Length = 990
Score = 975 bits (504), Expect = 0.0
Identities = 572/603 (94%), Gaps = 22/603 (3%)
Strand = Plus / Plus
Query: 1 atgaagactcaggacatctttggaggcacagctgaactagaatctcacctgtcaagggat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 197 atgaagactcaggacatctttggaggcccagctgaactagaatctcacctgtcaagggat 256
Query: 61 gagccagatagctcttattccaccaagcaaatcccatgcttttagtatctaccttggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagccagatagctcttattccaccaagcaaatcccatgcttttagtatctaccttggctc 316
Query: 121 ccattcactgtttgtttctgaagatagagatagagacttcactgagaaaagattatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccattcactgtttgtttctgaagatagagatagagacttcactgagaaaagattatgact 376
Query: 181 tgtattccaacacacacacatactcacacacatatgctcacacacacacatatacttaca 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 377 tgtattccaacacacacacatactcacacacatatgctcacacacaca--tatacttaca 434
Query: 241 cacactgatactcacacatgttcacacacatacacttacacacacatatacttacctact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacactgatactcacacatgttcacacacatacacttacacacacatatacttacctact 494
Query: 301 ttcactcacacacacatgctcacaca----cactcacacaaatgctctcacaca--caca 354
|||||||||||||||||||||||||| |||||||||| | || | ||||| | ||
Sbjct: 495 ttcactcacacacacatgctcacacatacacactcacacaca--ct-t-acacatgctca 550
Query: 355 tacacacactcacacata------cacatgc-tcacacacactcacacaaatgcttacac 407
|||||||||||||| | |||| || | ||||||||||||||||||||||||||
Sbjct: 551 --cacacactcacacaaatgctctcacacgcat-acacacactcacacaaatgcttacac 607
Query: 408 acatgctcacatacacacactaagagagcaaggaacttaagtacatttgtgactgcaatg 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acatgctcacacacacacactaagagagcaaggaacttaagtacatttgtgactgcaatg 667
Query: 468 ggaagaactgtcccatcttanaatgacaataagaaacacttcaggtagtaaggccatttt 527
|||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 668 ggaagaactgtcccatcttaaaatggcaataagaaaaacttcaggtagtaaggccatttt 727
Query: 528 gctcttctctagcaagaaataggctcttgcaatgattcccctccagaatctcctctatcg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gctcttctctagcaagaaataggctcttgcaatgattcccctccagaatctcctctatcg 787
Query: 588 gcg 590
|||
Sbjct: 788 gcg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
