BAC Information

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BAC

Clone NameMSMg01-364H23
Chromosome14 (Build37)
Map Location 71,337,194 - 71,337,598
singlet/doubletsinglet
Overlap geneGfra2
Upstream gene1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
Downstream geneLOC100043132, LOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364H23.T7 (MSMg01no364_h23.b1)MSMg01-364H23.TJ (MSMg01no364_h23.g1)
ACCAG472681AG472682
length773777
length of high quality
(start - end)		410 (51 - 460)424 (81 - 504)
definitionCHROMAT_FILE: MSMg01no364_h23.b1 PHD_FILE: MSMg01no364_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:38 2005CHROMAT_FILE: MSMg01no364_h23.g1 PHD_FILE: MSMg01no364_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCAGGAT
CCGCGGAATTCTTGGGACTGTCCTGCTATTTTCCCTAGGTGAAGGGGAGC
TGTAAGCCAGAATTAAGCAGCTGCTATTGTCACTACAGCAGGCAGGAGGT
TTTCCTGTTTGTTGCTGGGACTGCTCTCTGCTGAGTGGTCTTTACGGAGG
GCAGAGCTTGCTTCCCTCTGACTACCCCAGTGCTCTACCAGGACTGGCCT
GAGCATCTTTAGAAAGATGCGGAGACCTTCTTAGCCGTCATCCTGAGACT
TTAGGAAAGATGATGCCCAAAGCAGAATAGCTGAGAAATATATCTGTGTG
TTGATATCACTAAATCACCAACTGGCTAGTTGTGTCAGAAAAGGGGCTGT
TGAGAGACGTAGAAAAAGATATGAGAGCATGTTGATTATACTGAGTTTCT
GAGGGCTGAGGTATACACTTTTTGGGCTCTGTTTTCTTTAAGGATTTTGC
TTTTCTGTGGGCGCCTTATTTTATTTTTTCCAATACTCATACCAATATCA
CCACTATTATTAATAGTATTATGGCTTTTTTAGGTCTCCCTTTTTCACCC
CCAGCATACTGGAAAAATTTCGGGGCCACGGTGATCCTTATTCCTGTGCA
TATTCCTGGTCCATTCCTCAATGTTAAATTAAGTCTCCGAAGTTCGCGTT
TTCCCTCCCTTTCTTTTCCTATTGGTTAATTTCCTTCTTTTATTTTCCTC
CCTTCTTTTCTCATCCTATATCT

NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGTCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACTTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACATATGCTCCACTATGTTCATAGCAGTCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AANATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAA
TGAATTTATGAAATTCCCAGCCCAATGGATGGACCTGGAAGGGATCATCC
CGAGGGAGGTAACACATTCTCCAAGAAATTCCCCCAAAATGTACTCTCTG
ATAAAGGGATATTATCCCCCCACCTTGTGAACCCTGTAAATTTTAAAATA
ATTTGCTATACCTCCGTAACCCCCCTAAAAATGTAAAATGTACTTGTGGT
TCCTCTATGTCCCTTCTCCAATTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_h23.b1 MSMg01no364_h23.b1 CHROMAT_FILE:
MSMg01no364_h23.b1 PHD_FILE: MSMg01no364_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:38 2005
         (410 letters)



>mm_chr14_71336989_71337798
          Length = 810

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%), Gaps = 2/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttgggactg-tcctgctattttccctaggtgaaggggagctgtaagccagaatt 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttgggactggtg-tgctattttccctaggtgaaggggagctgtaagccagaatt 264

                                                                       
Query: 65  aagcagctgctattgtcactacagcaggcaggaggttttcctgtttgttgctgggactgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcagctgctattgtcactacagcaggcaggaggttttcctgtttgttgctgggactgc 324

                                                                       
Query: 125 tctctgctgagtggtctttacggagggcagagcttgcttccctctgactaccccagtgct 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctgctgagtggtcattacggagggcagagcttgcttccctctgactaccccagtgct 384

                                                                       
Query: 185 ctaccaggactggcctgagcatctttagaaagatgcggagaccttcttagccgtcatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 ctaccaggactggcctgagcatctttagaaagatgcggagaccttcttagccgtcatccc 444

                                                                       
Query: 245 gagactttaggaaagatgatgcccaaagcagaatagctgagaaatatatctgtgtgttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagactttaggaaagatgatgcccaaagcagaatagctgagaaatatatctgtgtgttga 504

                                                                       
Query: 305 tatcactaaatcaccaactggctagttgtgtcagaaaaggggctgttgagagacgtagaa 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatctctaaatcaccaactggctagttgtgtcagaaaaggggctgttgagagacgtagaa 564

                                                         
Query: 365 aaagatatgagagcatgttgattatactgagtttctgagggctgag 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagatatgagagcatgttgattatactgagtttctgagggctgag 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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