BAC Information

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BAC

Clone NameMSMg01-364I08
Chromosome14 (Build37)
Map Location 22,570,987 - 22,571,460
singlet/doubletsinglet
Overlap geneSamd8
Upstream geneCamk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13
Downstream geneVdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075, EG435392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I08.T7 (MSMg01no364_i08.b1)MSMg01-364I08.TJ (MSMg01no364_i08.g1)
ACCAG472699AG472700
length797787
length of high quality
(start - end)
478 (46 - 523)400 (76 - 475)
definitionCHROMAT_FILE: MSMg01no364_i08.b1 PHD_FILE: MSMg01no364_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:39 2005CHROMAT_FILE: MSMg01no364_i08.g1 PHD_FILE: MSMg01no364_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGG
AATTCTTGGGTTTATTTACTCATTTACGACAAGAAGTGAAGCCACCCATA
GTCCAGAATCCTACAAGATCGTCCCCATTGGTAACTCGAGGATTGAAGTT
ACCTCGTACAAAATTTGAAAGGTGATTTTAACAGCTTTTTCAGGATCAGT
ATTCTCTTGCTATTTAGCAGATTTTTTCCACATGAATGGAATTTTTTTCT
ATCGTGATCAAGAAACCTAAAGGTAGCAAAGGGAGGTTATAGTTGGCAGC
TGACAAAAGAAATGTGTAAGCACACAGGTGCTTTTTCTGGAAGATGTAGT
ACCAAAGCTGTAACTCTGCCAGAAAAATATTGATCCCAAAACTTTATGAG
TTCATATAAATAAGAAATGGTATCGTGACTCCTTTGACTTCTAACTGAGG
CTCATTAAGGCTCCTTGCAGCTTATCAGATAGGTTTGGCTATGTTGTTGG
GCATTTCAAAACCAACTTTTAATTATTTTCTACCTTAAACAAGCCTCTAC
TGGTCCATCCTCACAAGATGACCATCTACTGTGGTTGCCACAAGCTTTTA
AATTGCTTTCCTGTGAAATGCGACCTTAATATTCAAACGTGCCAATAGTC
CATGGGATTATATATTTTCTCACCCAAATAATACTTTTTCTTTGCTTCTT
TTTTACCTTTGCTGAAATTTTTCCTTCCTTCACTTCAAATTTCTCCTTCT
ATCGTGAACGATTTTATTACTTGATTTACATGTACTTTCAATTAATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCCATATACAGTTATCAAACCCA
GACACTATTGTGGATGCCAAGAAGTGCATGCTGAAAGGATCCTGATATGA
CTGTCTCCTGAGAGGCCCTGCCAGAGCCTTACAAATACAGAGGTAGATGT
TAGCAGCCAACCATTGGATTGAGCATGGGGTCCCTAATAGAGTAGTTAGA
GAGTGACTGAAGGGTTGAAGGGATTTGCAATCTCATAGGAAGAACAACAA
TATTAACCAACCAGATTCCCCAAAACACCCAGTGACTAAGCCATCAACAA
AGAAGTACACATGGCTCCAGCTGCATATGTAGTAGAGGATGGCCTTGTCA
TGCATCAATTGGAGGAGAGGTACCCGCCCCTATGAAGGCTCAATAGATGC
CCCAGTGTAAGGGAATTGAGGGTGGGGAAGTGCTTATTTTCTTTTTATTT
CTTGGAGCGTAAATTTTTCCTGTGTATTCGTCTTGTTTTTCGACTTGCTT
TTTCACTATCTTTATTTACTCTACATCTATTGATGTTCATCTATTTCGAC
TTTACCTTTACTTTGTCCTTTCTAGTTTTCGCTTTCTCTTTTTTTTTACT
TCTTACCCTCTCGGTATTTCTCTTTATCTCTCTCGCTCTCTTGTATTTTC
CCTCTTCTTTATCTTTCCTATTTAGTTATCTCTATACTCTGTTTCCTTCT
TAATTCTGCTGACTAGTGGTCCGTCGTGCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i08.b1 MSMg01no364_i08.b1 CHROMAT_FILE:
MSMg01no364_i08.b1 PHD_FILE: MSMg01no364_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:39 2005
         (478 letters)



>mm_chr14_22570782_22571660
          Length = 879

 Score =  861 bits (445), Expect = 0.0
 Identities = 467/477 (97%), Gaps = 7/477 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcttgggtttatttac---tcatttacgacaagaagtgaagccacccatagtccaga 62
           ||||||||||||||   |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcttgggttta---agaggtcatttacgacaagaagtgaagccacccatagtccaga 262

                                                                       
Query: 63  atcctacaagatcgtccccattggtaactcgaggattgaagttacctcgtacaaaatttg 122
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 atcctacaagatcgtccccattggtaactcgaggattggagttacctcgtacaaaatttg 322

                                                                       
Query: 123 aaaggtgattttaacagctttttcaggatcagtattctcttgctatttagcagatttttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaggtgattttaacagctttttcaggatcagtattctcttgctatttagcagatttttt 382

                                                                       
Query: 183 ccacatgaatggaattttttt-ctatcgtgatcaagaaacctaaaggtagcaaagggagg 241
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacatgaatggaattttttttctatcgtgatcaagaaacctaaaggtagcaaagggagg 442

                                                                       
Query: 242 ttatagttggcagctgacaaaagaaatgtgtaagcacacaggtgctttttctggaagatg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatagttggcagctgacaaaagaaatgtgtaagcacacaggtgctttttctggaagatg 502

                                                                       
Query: 302 tagtaccaaagctgtaactctgccagaaaaatattgatcccaaaactttatgagttcata 361
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 tagtaccaaagctgtaactctgccagaaaaatattgatcccaaaactttttgagttcata 562

                                                                       
Query: 362 taaataagaaatggtatcgtgactcctttgacttctaactgaggctcattaaggctcctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taaataagaaatggtatcgtgactcctttgacttctaactgaggctcattaaggctcctt 622

                                                                    
Query: 422 gcagcttatcagataggtttggctatgttgttgggcatttcaaaaccaacttttaat 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcagcttatcagataggtttggctatgttgttgggcatttcaaaaccaacttttaat 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)