BAC Information

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BAC

Clone NameMSMg01-364K02
Chromosome14 (Build37)
Map Location 110,885,788 - 110,886,237
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K02.T7 (MSMg01no364_k02.b1)MSMg01-364K02.TJ (MSMg01no364_k02.g1)
ACCAG472780AG472781
length782768
length of high quality
(start - end)		456 (45 - 500)556 (78 - 633)
definitionCHROMAT_FILE: MSMg01no364_k02.b1 PHD_FILE: MSMg01no364_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:48 2005CHROMAT_FILE: MSMg01no364_k02.g1 PHD_FILE: MSMg01no364_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCG
GAATTCTCTTAGTTGAACCATGTAGGTATTCAAATACAAAATTTAATCTC
TCATAGTCTAATTTAAAAGAAGTTCCAGCAAACTATTATAGAATTACATA
GATGTATATTCAATAGCATTGTAATCTTGTAAAAATATGCTTGTAATATA
AATATTATAAATATATTTACATATATTAAAATAAAAAACGTTATGACCAC
ATATGCTTTAATATAGAAGTGATAACAAGATGACAAATTGTTAATATTAT
AAATGATCCACATATTAGGGGAGAAACATCTTTAAATAACATGCAGACAT
CTAAGTTAGTTTTGACAACATTCATGCTGTGGGATGATATTCCCCCAGGA
AGACAGTTTGGTAAGGGTGCCTGCTTCTTTTCCAGGTCTGAGAGTCTGTA
TGTAGCTGAACAGTAGTTATAAGAGTGCTAACACAGGAAAAATACTGCAA
ATGTGGTTTTTTCGGTCTCCCACAATTTATATCACTTGCTATTTGATAGA
AAAGCTGTTATGATGGTTTCAGTCCCCAGAGAAAAAAGCTATATGTGGAG
ATTATAATTCATGAACAGTGGGAAATTTAGAAAATAACAATATATTGTTT
TATTAAACTCTTACCCGAACAACCCCTAATTCAAAAAGCCATTGCCCGTT
CCCTTTTTAAAAAAGACTTGCCCTACTCTAAATCATTAAAACTATCGCCC
TTTATATTAAATATCCCCACCCTCATTTGTAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGACTTTAAAGAAGTTAAT
GCTACAACCTCAATTATTCCATAAAATAGAAACAGAAAGGCCACTGCCAA
ATTCTCTTCATGGGGACATATTTACTTTGACATGCAAATTACAAAGATAT
TCAACAAAGTAATATAAGTGCAGGCCACTTTTCTGTTATGTATAGAGATG
CAATTTATTTCAATGTATTGCTTGTAAACTAAATACAAAAAGACATCAAA
AAGATCATCTACAAACAGCAACCTATCCATAAAACAACTGAAAATATGTC
TTGCCTTCAAGAAGTGTAGGGACAAAGATGGAGTAGAGAAAGAGGTTATG
GCCAACTAAAGACTAGTCCAAATTGAGACCCATCGCATGGTCCAGAACCA
ATCCCTGACAATAGTAATACTCCGTTATGCTGACAGACAGGAGCCTGACC
TAACTTTCCTCTGAAAAGAGCTATTCAGTAGCTAATGGAAAGAGATACAG
AGACTTACAATGAAGCATTGGATTTAGCTCAGGGAGTCTTATGGAACACT
TGGGGGAAGGATTAAGGGCTCTGAATGGGATAAAAGCTCCACAAGAAGAC
AAGCAGAATCGACTAAGCTGGACTCTTGGTAGCTATGAGAAACTGAACCA
CTAGCCCAAGAGTGGAGATGGCTTGGACCAAGTCCTCCTGACAAAATGAA
AAATGTGCAGCCTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k02.b1 MSMg01no364_k02.b1 CHROMAT_FILE:
MSMg01no364_k02.b1 PHD_FILE: MSMg01no364_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:48 2005
         (456 letters)



>mm_chr14_110885582_110886437
          Length = 856

 Score =  847 bits (438), Expect = 0.0
 Identities = 447/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcttagttgaaccatgtaggtattcaaatacaaaatttaatctctcatagtcta 66
           |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcttggttgaattatgtaggtattcaaatacaaaatttaatctctcatagtcta 266

                                                                       
Query: 67  atttaaaagaagttccagcaaactattatagaattacatagatgtatattcaatagcatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttaaaagaagttccagcaaactattatagaattacatagatgtatattcaatagcatt 326

                                                                       
Query: 127 gtaatcttgtaaaaatatgcttgtaatataaatattataaatatatttacatatattaaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtaatcttgtaaaaatatgcttgtaatataaatattataaatatatttacatatattaaa 386

                                                                       
Query: 187 ataaaaaacgttatgaccacatatgctttaatatagaagtgataacaagatgacaaattg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataaaaaacgttatgaccacatatgctttaatatagaagtgataacaagatgacaaattg 446

                                                                       
Query: 247 ttaatattataaatgatccacatattaggggagaaacatctttaaataacatgcagacat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaatattataaatgatccacatattaggggagaaacatctttaaataacatgcagacat 506

                                                                       
Query: 307 ctaagttagttttgacaacattcatgctgtgggatgatattcccccaggaagacagtttg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctaagttagttttgacaacattcatgctgtgggatgatattcccccaggaagacagtttg 566

                                                                       
Query: 367 gtaagggtgcctgcttcttttccaggtctgagagtctgtatgtagctgaacagtagttat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtaagggtgcctgcttcttttccaggtctgagagtctgtatgtagctgaacagtagttat 626

                                         
Query: 427 aagagtgctaacacaggaaaaatactgcaa 456
           ||||||||||||||||||||||||||||||
Sbjct: 627 aagagtgctaacacaggaaaaatactgcaa 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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