BAC Information

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BAC

Clone NameMSMg01-364L16
Chromosome14 (Build37)
Map Location 97,797,767 - 97,798,114
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364L16.T7 (MSMg01no364_l16.b1)MSMg01-364L16.TJ (MSMg01no364_l16.g1)
ACCAG472854AG472855
length813778
length of high quality
(start - end)		377 (51 - 427)430 (82 - 511)
definitionCHROMAT_FILE: MSMg01no364_l16.b1 PHD_FILE: MSMg01no364_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:57 2005CHROMAT_FILE: MSMg01no364_l16.g1 PHD_FILE: MSMg01no364_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCCTAGTCTCTCCCATTCTCGGGGTGTAATAGTGGGGT
GATGGGCAAGCAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAA
CGTCACGCTGCGGGTTATAAAACCAGCGCCATTTTCCCGGTTCGGAGTCT
TCCTGAGAAGCAAGCAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTT
GCGTCTTTCTTGCCGGTCGGGACGCAATACATTAAAAAAAAAAATAAACC
AAAAGATCAGGAATAGAGTTTTCAATATTTCCTTAAAGCATTGTGGGAAG
GTGGGAATTTCAAAGGATTTCCTATGTACTGAAACATTCAGCTGTGTTGA
GCCACAGCTGCAATCATGGTAATATGCGGCGAGCGGGTGTGGCGCGAGTC
CCAAAAGGTTCTAGTTACTGCAGCTAAGCCATATGACTTGGCTCTGACTT
TCCTCTTATAGTACTCTTATACCTTTATTGGCTGACCATTGTGTACCATC
TATACGGGCTGCCTCCAATTTTATTTTTAATATACCCTTGTTTTCTTGGA
TTTAATTGAAAACATTCATACTCATTTTTACCCTCCCACTTTTTTTTTAA
CTCCTGTATATACCTTAACTTTTTTTCAATTCTCTACTATCTTCTACCTC
TTGTCCCTATTACCTCTCTTATTTTCAACATTTATACTATGCATTTACTT
TTTTACCATTTTTTTTATCGTTTATCCATACTACTCATTTTCCCCTCTAT
TTTATTTTACTTG

NTTATCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTGGAACTCAAGCAG
GTCAGGAAGCAGGAGCTGATGGAGAGGCCATGGAGGGGTGTTACTTACTT
TCTTGCTTCCCCTGGCTTGCTCAGCTTGCATTCCTTTAGAACCCAAAACT
ACCAGCCCAGGGATGGCACCACCCACAATGGGCTCTCCCACACTTGATCA
CTAATTCAGAAAATGCCTTGCAGCTGGCATCTCATGAAGGCATTTCCTCA
AGGGAGCTCCTTTCTCTGTGATAATTGCAACTTGTGCCAAGTTGACACAC
AAAACCAGGTGTAATAGAGAAATTTCTTTTAAGGCTAAAAGTCTCAAAGT
TTCCCATTCCTTTACATAATCCATGACTATCTTTTAGGCAAACAAACAAA
CAAACAAACAACAATAACAACAACAAAAATCCCTGTATATCTTAATCAAA
TGGCTTGTAGCTAGTGGGTGTTTACATTTCTTTTTTCAGAACATGCAGAG
TACCTTTCTGTACCACAGATGTTGGAGCCCATACTCCCCATCTTGTCTAT
AGCAACAATATCTCCCTTATTGAATCACCTATTTCAGAAATCCCCAAAAA
TACCCCCTGGTCCATTCCCCTTTTCAAAAGAAAACCATTCGGAAGCCCCC
AAGCCCTTAATTTAAATCAAAATTTTGTGGTCCTGCGGTGAGAAAAAACT
GTTCTTTCATTTTCCCAATTATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_l16.b1 MSMg01no364_l16.b1 CHROMAT_FILE:
MSMg01no364_l16.b1 PHD_FILE: MSMg01no364_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:57 2005
         (377 letters)



>mm_chr14_97797338_97798114
          Length = 777

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 29  tctcggggtgtaatagtggggtgatgggcaagcaacgaatcaggagctgtcacgccatat 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tctcggggtgtaatagtggggtgatgggcaagcaacgaatcaggagctgtcacgccatat 718

                                                                       
Query: 89  caggtgctgaaacgtcacgctgcgggttataaaaccagcgccattttcccggttcggagt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caggtgctgaaacgtcacgctgcgggttataaaaccagcgccattttcccggttcggagt 658

                                                                       
Query: 149 cttcctgagaagcaagcaataaagctcttgccgcggaagattctggtttgttgcgtcttt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cttcctgagaagcaagcaataaagctcttgccgcggaagattctggtttgttgcgtcttt 598

                                                                       
Query: 209 cttgccggtcgggacgcaatacattaaaaaaaaaaataaaccaaaagatcaggaatagag 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttgccggtcgggacgcaatacattaaaaaaaaaaataaaccaaaagatcaggaatagag 538

                                                                       
Query: 269 ttttcaatatttccttaaagcattgtgggaaggtgggaatttcaaaggatttcctatgta 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttttcaatatttccttaaagcattgtgggaaggtgggaatttcaaaggatttcctatgta 478

                                                           
Query: 329 ctgaaacattcagctgtgttgagccacagctgcaatcatggtaatatg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctgaaacattcagctgtgttgagccacagctgcaatcatggtaatatg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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