BAC Information

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BAC

Clone NameMSMg01-364N12
Chromosome14 (Build37)
Map Location 95,376,952 - 95,377,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783
Downstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364N12.T7 (MSMg01no364_n12.b1)MSMg01-364N12.TJ (MSMg01no364_n12.g1)
ACCAG472942AG472943
length818770
length of high quality
(start - end)
349 (77 - 425)418 (78 - 495)
definitionCHROMAT_FILE: MSMg01no364_n12.b1 PHD_FILE: MSMg01no364_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:07 2005CHROMAT_FILE: MSMg01no364_n12.g1 PHD_FILE: MSMg01no364_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCCAAGCTCGTTCCGGAAATCAAGGATTTTCTAGGAACCATTGGA
ACACTGGTGGAGGCTTAGCTATATGCCAAAAATCAATCCTTAAAGGCATT
TATCATAAAACAATGCTGTAAAAGAGCACATGGATTCATACACCAGACTA
AAGCAGGGACTGGAAGGCTATGGGAATGACAAGGTTCCAAGAGGCATAGT
TTCCTTGAAACTCCTTGCCTCAAGTCTACCTTCAGGCCTTTCTCCTTGTC
AAGCAGACTTCACTGGAGAGGGTGNAGTANCTTGGTCTTGCAAACTTTAT
ATGCCCCAGTACAGGAAAATGCAAGGGCCAAGAAGTGTGAGTGGGTGGGT
AGGGGAGCAGGCCAGCCCCCCCCCCTTTTTTTNCTTATATCATTTAACAT
TCATTTTCTGCTAGTCTTTTCTTACAGCGAATTCCACATATCCCCACTAA
TTCGTCTCTCTATTCTAATTATCTGTCTCACTTCGATTCCCTCTTTCTAA
TATTTTTACACTTTTTTCCTCATATTCTATGTTTTTCTCCCGTCATTATC
TTTGCGTCTTTGTACTTATTTTTTTCCACTTTGCTCCCCCTTTTTTTTTT
CCCTCTATTACTCCCTCTCCATTTATCTTTTTTTTTTCATCTTCATCCCC
CATCCCTCCTAGCCGTCTCTCTAATTTCATTATCTCTCCTACTACATTAA
CTTTATAACCCTACTTTAATTACGTTTAAACGTTCTTCTACTATAGCTCG
TCTATTAAACATACAAGT
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTCAATATTAATAACTTTT
ATTTTCATAGCTGTGACAGAATATCTGACAGATCAACTTGGGTTAATTTT
GTAATAGCATTTAGAAAATAACATGTTGCTCCCCATTACCTCATGGAGGG
TTTTGTGGAATGTGTAGTTCCACCAATTATTGAGAGAGTCAAAATCAGCC
TCTACTCATATTTGAGTCATGCAGAGGGCCCAAGATCATTTCCAGTACAG
TACAACCTTCAATGGACTTTCATATTTTTTAAATTCCACCTGCCACCCCC
ATGTCCTACTAATATCATATTCTTCAAAACATCTCCAAAACCTAAAACTC
CAGACTAGATCTGTGGGGACACCTCTAATTCAACTGGAAGCATCATCCAG
GATGGAAATATAGAAGAAAGACTTCAGGGAGTTTCATAAATTAGTCTGGC
AAGCAGCACCTCTGTCCTTATAATAGACAGACTTTTTTTTCTACCTATAA
AATCAATTAGGCCAAAGAAATGATTATCCCCATTTAACGGACATATGTAG
GAGGAAATTTGTTGAAAAAATTTTGGTGTTAATAACCCCTAATTGGCGGT
TCGCTTACAGTTTTTTTTTTTTTGGGCGTGAAAATGGCTTTTTTTCTTTG
TCCTTTACGCCGAGATAATATTCGGTTCTCCATGTGCCCTTTGGGCTCGA
TTTGGGCTGTGGGTGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_n12.g1 MSMg01no364_n12.g1 CHROMAT_FILE:
MSMg01no364_n12.g1 PHD_FILE: MSMg01no364_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:07 2005
         (418 letters)



>mm_chr14_95376752_95377569
          Length = 818

 Score =  750 bits (388), Expect = 0.0
 Identities = 410/424 (96%), Gaps = 12/424 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttcaatattaataacttttattttcatagctgtgacagaatatctgacagatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgttttcaatattaataacttttattttcatagctgtgacagaatatctgacagatcaac 559

                                                                       
Query: 61  ttgggttaattttgtaatagcatttagaaaataacatgttgctccccattacctcatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgggttaattttgtaatagcatttagaaaataacatgttgctccccattacctcatgga 499

                                                                       
Query: 121 gggttttgtggaatgtgtagttccaccaattattgagagagtcaaaatcagcctctactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggttttgtggaatgtgtagttccaccaattattgagagagtcaaaatcagcctctactc 439

                                                                       
Query: 181 atatttgagtcatgcagagggcccaagatcatttccagtacagtacaaccttcaatggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atatttgagtcatgcagagggcccaagatcatttccagtacagtacaaccttcaatggac 379

                                                                       
Query: 241 tttcata------ttttttaaattccacctgccacccccatgtcctactaatatcatatt 294
           |||||||            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttcatagcaacc------aaattccacctgccacccccatgtcctactaatatcatatt 325

                                                                       
Query: 295 cttcaaaacatctccaaaacctaaaactccagactagatctgtggggacacctctaattc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 324 cttcaaaacatctccaaaacctaaaactccagactagatctgtggggacatttctaattc 265

                                                                       
Query: 355 aactggaagcatcatccaggatggaaatatagaagaaagacttcagggagtttcataaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactggaagcatcatccaggatggaaatatagaagaaagacttcagggagtttcataaat 205

               
Query: 415 tagt 418
           ||||
Sbjct: 204 tagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)