BAC Information

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BAC

Clone NameMSMg01-365D11
Chromosome14 (Build37)
Map Location 83,475,038 - 83,475,550
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D11.T7 (MSMg01no365_d11.b1)MSMg01-365D11.TJ (MSMg01no365_d11.g1)
ACCAG473226AG473227
length802720
length of high quality
(start - end)
83 (41 - 123)513 (56 - 568)
definitionCHROMAT_FILE: MSMg01no365_d11.b1 PHD_FILE: MSMg01no365_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:39 2005CHROMAT_FILE: MSMg01no365_d11.g1 PHD_FILE: MSMg01no365_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTCTTCAGCTCTGTACTCCATTTTTTAAATTGTTTTGAGGGGTTTGTTG
GTTTGTTTGTTTTGTGGTTTTGTTTTATACCCACATTAACTCACCCTACC
ACCATACCCCCCCTCCACCAATAACCATCCCTTCCCCCCCCCCACCTTTC
CCTATCCTCTCATAATTCAACCCTCAAACCCCCTATTTTTTTATCACCAA
TTAAACTGTAAACATCATAATTTCCATAACAATATCCACCCAACTACATC
CAATTTTTTTTACCCCCCCCACTTCACTACCTCAAATAAATACCCCCTTT
CAATTCCCTTCCCCACCACATACAAATCCAACCAGAAATACACACTAATC
TCCCCACACTAACTTCCCCCCCTAACCAAAAATTAACCACCCAATTACAC
CCCCTATACCTTTTTACTTAACATCACATTCCCTCCAACTTTTAATTTAC
TCTTCAAATATCAAAACCCCACACCCCACCACATTATCTACTTTACCTAC
CCTCCCTCACTCCATTACTTTTTTTAAAAAACCTCACCATCACCAATTCA
TATTACCCAAATTCCCTGCCCCACAATCCCATAAAATCATAAACCTATCC
CCTACCTCCCATACACACATTCATATACCCCAACCCCCCCACCCACACCT
ATCCTTCTATAATCACCCTACCATCCCTACCCAACATCTAATTAACCCCA
CTATACTAATACTAACCCACTCCAAAATAATAAAACCTATATAACTTATA
AN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTACCATGTAGCTCTTCATCAACTTGCATTGCAGAAACTTTTGC
TTCTCGATTTAGATATGGATGCTAACTCTTGGATGTATGATAAGCTTCCT
CTATATAGAAGTTCTTTTTTTTTGTCTTTATTTCTATTGAACTGCACTTA
TAAGGTAATGATAATATTCTTCAATAAATTCATCCCCTAGTTATTTGTGA
ATTTCATTCCTTAAAATTATGAGACGAGGAAACTGAAAGCCTAGGGATGG
TTTTGATGGGCATTGATTTCTTTATTAGAGGAACAGCATAAACTATGCTT
TGTGAGAAAAGAAAGCCTCTGTCACTTTGAGATTCAGTACTTTTTCATAT
ACACAGGAACAAAAATTATCTAGAAGACAGGCCTGTGGCATGTCACTGAA
GTATTACTAGGACCAGGACTGCTTTAGCGGGATCATGAGAGTCTAGATGG
CTCAGCAGGTAAAGGGACTTACTGAGAAGTCTGATGAGCTGAGTTCAGTT
TCCAAGTCTAGCATGGAAGAAGGTTTTTCTCTGCTTTCTATACGTGTGCT
TCTTTCTGCATCTACAAACAATGACAAATATCTTCCTCCAGCTACCAAGT
AAACTGGACAACTAACAGTGGAGGTCCTTGCGAACCAACCACAGGTTCAA
AAAAAATAAAATTTTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d11.g1 MSMg01no365_d11.g1 CHROMAT_FILE:
MSMg01no365_d11.g1 PHD_FILE: MSMg01no365_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:39 2005
         (513 letters)



>mm_chr14_83474912_83475824
          Length = 913

 Score =  992 bits (513), Expect = 0.0
 Identities = 513/513 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaccatgtagctcttcatcaacttgcattgcagaaacttttgcttctcgatttagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tctaccatgtagctcttcatcaacttgcattgcagaaacttttgcttctcgatttagata 580

                                                                       
Query: 61  tggatgctaactcttggatgtatgataagcttcctctatatagaagttctttttttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tggatgctaactcttggatgtatgataagcttcctctatatagaagttctttttttttgt 520

                                                                       
Query: 121 ctttatttctattgaactgcacttataaggtaatgataatattcttcaataaattcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctttatttctattgaactgcacttataaggtaatgataatattcttcaataaattcatcc 460

                                                                       
Query: 181 cctagttatttgtgaatttcattccttaaaattatgagacgaggaaactgaaagcctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cctagttatttgtgaatttcattccttaaaattatgagacgaggaaactgaaagcctagg 400

                                                                       
Query: 241 gatggttttgatgggcattgatttctttattagaggaacagcataaactatgctttgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gatggttttgatgggcattgatttctttattagaggaacagcataaactatgctttgtga 340

                                                                       
Query: 301 gaaaagaaagcctctgtcactttgagattcagtactttttcatatacacaggaacaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaaagaaagcctctgtcactttgagattcagtactttttcatatacacaggaacaaaaa 280

                                                                       
Query: 361 ttatctagaagacaggcctgtggcatgtcactgaagtattactaggaccaggactgcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttatctagaagacaggcctgtggcatgtcactgaagtattactaggaccaggactgcttt 220

                                                                       
Query: 421 agcgggatcatgagagtctagatggctcagcaggtaaagggacttactgagaagtctgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agcgggatcatgagagtctagatggctcagcaggtaaagggacttactgagaagtctgat 160

                                            
Query: 481 gagctgagttcagtttccaagtctagcatggaa 513
           |||||||||||||||||||||||||||||||||
Sbjct: 159 gagctgagttcagtttccaagtctagcatggaa 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)