BAC Information

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BAC

Clone NameMSMg01-365L19
Chromosome14 (Build37)
Map Location 34,487,474 - 34,657,176
singlet/doubletdoublet
Overlap genenone
Upstream gene3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
Downstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L19.T7 (MSMg01no365_l19.b1)MSMg01-365L19.TJ (MSMg01no365_l19.g1)
ACCAG473621AG473622
length751709
length of high quality
(start - end)
403 (59 - 461)565 (46 - 610)
definitionCHROMAT_FILE: MSMg01no365_l19.b1 PHD_FILE: MSMg01no365_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:19 2005CHROMAT_FILE: MSMg01no365_l19.g1 PHD_FILE: MSMg01no365_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,487,474 - 34,487,876)(34,656,612 - 34,657,176)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGATCCGCGGAATTCAACAGT
TCCCGAATGTGGAGGCAGGAGCTGATGCAGAGGCTGTGAAGGGGTGCTAC
TTACTAGCTTGGCCATCGTGGCTTGTTCAGCCTGCTTTCTTATAGAACCC
AGGACCCCCAGCCTAGGGATGGCACCATTCACAATAGGTTGGGTCCTCCC
TTATCAATCACCAGTTAAAAATTCCCTACATACATGCAGCCCTGTCTTAG
GGAGGCATTTTCTCAGTTAAGGTTCCCTCCTCTCAAATGGCTTTAGTTAG
TGTCAAGTTTACATATAACTAGCCAGCATAGGGGACTTCCTTTGCCCCAG
GCCATAAATTTTCTACACCCTATTGCTTTGGATCTTTTCGATCACTTTTC
ATTGATAGACACAGAGGCTCAGAGAGGTTAAATAACTGGAGTTTCATGGA
CAGGAGGCTTCACAGACCAGACCTGAATCCTGCCTGATGAGATCCTAAAA
AGCCCAGAGGAAGAGAATCCTGCGATAAGCGCTGCATTGTTCTATGCCAG
GTGTTTGCCTATCACCAAGGCCAGTCTAGTCATCAAGTCTGCCTGGACAC
TGGTCTATAGGACACCTTGAGAAAGGTGCATTTCCAAATAATGCTTCCTG
ATTTACTACCCTTTCACTCTACATCCTCCACCAGTGTGGACACTTGGGAG
ATTTAATTCCGAGACTGTTTTCACCTTTCTATATAACACGGTTCCGTAAT
T
GTTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAT
CTCGTGTTTTGAAACTTGGTGTCTTTCCCAGAAATGATGTATTTAAAAAA
ATTTTCTTATGGCTGGCAGCACCTAAACTATTGTCCTGTCATTATGATAA
ATTGGCTCAGTCTTCAAATATTAATTGGAAACATATGCATGTCTTATCAA
TATGGCATTCTAATTAGTAGGGTCATCTCGAGGTTCCATGGACCAAGAGA
TGAGAGATGGGTGTGTGCGGTACTTGACTGATTAATCATCTCTGAGAAGA
TTAATGCAATACTCTGTGGAATTTTCTGTTTAATTGGTTACTGTGTAAGA
TCACAGGACAATTGATTGCTTAACTTCTCTCCCACCTCCTCATTACACAC
TTCGTAATATAGTACCCGTGCTGGGAACGATTATTTTAGTTTGTTTATTC
TTCCTGTGTTTATTTTTCTTATCTACAGAGATAGTGAAAACTGCCACTTG
TGCTTTGCAAATAGACACATGCTCAGTAGAAAAATATAACTCTAAATATA
AATACCCTTCTACTTAATAAGAACAATAAGACTTAATTCTCTTTCCCCAG
CTCTTCCCAGACCCTCATTCTCTGGCTTTGGCTTCTTGGCTCCTCTGGGT
CTCCAGCTTGCCAACTTTAGGTCTTGTGACTTCTCAGACTCCATTATCTT
GCAAGAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l19.b1 MSMg01no365_l19.b1 CHROMAT_FILE:
MSMg01no365_l19.b1 PHD_FILE: MSMg01no365_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:19 2005
         (403 letters)



>mm_chr14_34487274_34488076
          Length = 803

 Score =  741 bits (383), Expect = 0.0
 Identities = 398/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggaggcaggagctgatgcagaggctgtgaaggggtgctacttactagcttggccatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gtggaggcaggagctgatgcagaggctgtgaaggggtgctacttaatagcttggccatcg 260

                                                                       
Query: 61  tggcttgttcagcctgctttcttatagaacccaggacccccagcctagggatggcaccat 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcttgtttagcctgctttcttatagaacccaggacccccagcctagggatggcaccat 320

                                                                       
Query: 121 tcacaataggttgggtcctcccttatcaatcaccagttaaaaattccctacatacatgca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 321 tcacaataggttgggtcctcccttatcaatcaccagttaaaaattccctacatgtatgca 380

                                                                       
Query: 181 gccctgtcttagggaggcattttctcagttaaggttccctcctctcaaatggctttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctgtcttagggaggcattttctcagttaaggttccctcctctcaaatggctttagtt 440

                                                                       
Query: 241 agtgtcaagtttacatataactagccagcataggggacttcctttgccccaggccataaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtcaagttgacatataactagccagcataggggacttcctttgccccaggccataaa 500

                                                                       
Query: 301 ttttctacaccctattgctttggatcttttcgatcacttttcattgatagacacagaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctacaccctattgctttggatcttttcgatcacttttcattgatagacacagaggc 560

                                                      
Query: 361 tcagagaggttaaataactggagtttcatggacaggaggcttc 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagagaggttaaataactggagtttcatggacaggaggcttc 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no365_l19.g1 MSMg01no365_l19.g1 CHROMAT_FILE:
MSMg01no365_l19.g1 PHD_FILE: MSMg01no365_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:19 2005
         (565 letters)



>mm_chr14_34656412_34657376
          Length = 965

 Score = 1069 bits (553), Expect = 0.0
 Identities = 562/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatctcgtgttttgaaacttggtgtctttcccagaaatgatgtatttaaaaaaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aacatctcgtgttttgaaacttggtgtctttcccagaaatgatgtatttaaaaaaatttt 706

                                                                       
Query: 61  cttatggctggcagcacctaaactattgtcctgtcattatgataaattggctcagtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttatggctggcagcacctaaactattgtcctgtcattatgataaattggctcagtcttc 646

                                                                       
Query: 121 aaatattaattggaaacatatgcatgtcttatcaatatggcattctaattagtagggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaatattaattggaaacatatgcatgtcttatcaatatggcattctaattagtagggtca 586

                                                                       
Query: 181 tctcgaggttccatggaccaagagatgagagatgggtgtgtgcggtacttgactgattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 585 tctcgaggttccatggaccaagagatgagagatgggtgtgtgcggtacttggctgattaa 526

                                                                       
Query: 241 tcatctctgagaagattaatgcaatactctgtggaattttctgtttaattggttactgtg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 525 tcatctctgagaagattaatgcaatactctgtggaattttccgtttaattggttactgtg 466

                                                                       
Query: 301 taagatcacaggacaattgattgcttaacttctctcccacctcctcattacacacttcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taagatcacaggacaattgattgcttaacttctctcccacctcctcattacacacttcgt 406

                                                                       
Query: 361 aatatagtacccgtgctgggaacgattattttagtttgtttattcttcctgtgtttattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatatagtacccgtgctgggaacgattattttagtttgtttattcttcctgtgtttattt 346

                                                                       
Query: 421 ttcttatctacagagatagtgaaaactgccacttgtgctttgcaaatagacacatgctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttcttatctacagagatagtgaaaactgccacttgtgctttgcaaatagacacatgctca 286

                                                                       
Query: 481 gtagaaaaatataactctaaatataaatacccttctacttaataagaacaataagactta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtagaaaaatataactctaaatataaatacccttctacttaataagaacaataagactta 226

                                    
Query: 541 attctctttccccagctcttcccag 565
           |||||||||| ||||||||||||||
Sbjct: 225 attctctttctccagctcttcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)