Query= MSMg01no366_b04.b1 MSMg01no366_b04.b1 CHROMAT_FILE:
MSMg01no366_b04.b1 PHD_FILE: MSMg01no366_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:47 2005
(508 letters)
>mm_chr14_71137842_71138749
Length = 908
Score = 975 bits (504), Expect = 0.0
Identities = 507/508 (99%)
Strand = Plus / Plus
Query: 1 aagccagatttggaagaaatttataaaaatcgaaacatcaggaagctgaggtaggtgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccagatttggaagaaatttataaaaatcgaaacatcaggaagctgaggtaggtgaga 260
Query: 61 gtttaaggccagtttgggttattacataccaagccagtttcaaaatcaaccccctgcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaaggccagtttgggttattacataccaagccagtttcaaaatcaaccccctgcact 320
Query: 121 ccatatacacttgaactcagtctctgaagtacttagattatatatgtgtatgccatcaat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ccatatacacttgaactcagtctctgaagtactcagattatatatgtgtatgccatcaat 380
Query: 181 cccagctcagagggcaacttgtaggagtcagctcttgtctactaccacccgtaatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagctcagagggcaacttgtaggagtcagctcttgtctactaccacccgtaatgtctg 440
Query: 241 aggacagttacagtgtagttatttataataatagatctttgggccggagtgaagagggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacagttacagtgtagttatttataataatagatctttgggccggagtgaagagggtt 500
Query: 301 gacctgagtaagcagaggtcctaaattcaattcccagcaaccacatgaaggctcacaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctgagtaagcagaggtcctaaattcaattcccagcaaccacatgaaggctcacaacc 560
Query: 361 atctgtacagctacagtgtactcatatacataaaataataaataaatcttaaaaaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgtacagctacagtgtactcatatacataaaataataaataaatcttaaaaaaaaga 620
Query: 421 aaacaaacccaattaaaacccacaaaaggcacaggaaatatataaaatttccccaatcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaaacccaattaaaacccacaaaaggcacaggaaatatataaaatttccccaatcta 680
Query: 481 aaggatatttctattaaggtacaagaag 508
||||||||||||||||||||||||||||
Sbjct: 681 aaggatatttctattaaggtacaagaag 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_b04.g1 MSMg01no366_b04.g1 CHROMAT_FILE:
MSMg01no366_b04.g1 PHD_FILE: MSMg01no366_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:47 2005
(594 letters)
>mm_chr14_71316409_71317405
Length = 997
Score = 1094 bits (566), Expect = 0.0
Identities = 589/598 (98%), Gaps = 5/598 (0%)
Strand = Plus / Minus
Query: 1 ataagtgcccaaatggaagtggtgacaaaacagaaagatcagagaggcatctg-gcttag 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 797 ataagtgcccaaatggaagtggtgacaaaacagaaagatcagagaggcatctgtg-ttag 739
Query: 60 acaccaaaccagtcataactaacataggggtagcctaactcaacaagactgcctaggttg 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 738 acaccaaaccagtcataactaacacaggggtagcctaactcaacaagactgcctaggttg 679
Query: 120 agcataaaaatagtgattaaagcggaagtgggcagaaccatagatgcccatgtttactac 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 agcataaaaatagtgattaaagcagaagtgggcagaaccatagatgcccatgtttactac 619
Query: 180 gggctgagaagcaatggcacctgagttggaagaaatcaagagggtctcattgcatgaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gggctgagaagcaatggcacctgagttggaagaaatcaagagggtctcattgcatgaaat 559
Query: 240 caagagtttcaaacatgaaggagat---ggagagtcaagtggatgatcaacagacctcaa 296
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 558 caagagtttcaaacttgaaggagatgaaggagagtcaagtggatgatcaacagacctcaa 499
Query: 297 gcaagtagcattgtagactaacaaggagataaagaataaacaaactctaccagagtggga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcaagtagcattgtagactaacaaggagataaagaataaacaaactctaccagagtggga 439
Query: 357 tgattgactggaaagacagagggggaaggagagggacaggagaatggacagaagtgggga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgattgactggaaagacagagggggaaggagagggacaggagaatggacagaagtgggga 379
Query: 417 tcctgtgctataacctaactatcatctcttgtcctcaagaggccacccaactgcagcttt 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcccgtgctataacctaactatcatctcttgtcctcaagaggccacccaactgcagcttt 319
Query: 477 agttttgtagccattagtctctgaactctctcctaccgcaggtcaaggtctgctggagcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agttttgtagccattagtctctgaactctctcctaccgcaggtcaaggtctgctggagcc 259
Query: 537 ataccaatactaatctgtgaaggctcccagttgcctggagctcaaagtctagagcaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ataccaatactaatctgtgaaggctcccagttgcctggagctcaaagtctagagcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 997
Length adjustment: 10
Effective length of query: 584
Effective length of database: 987
Effective search space: 576408
Effective search space used: 576408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
