BAC Information

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BAC

Clone NameMSMg01-366B16
Chromosome14 (Build37)
Map Location 50,408,408 - 50,574,813
singlet/doubletdoublet
Overlap geneLOC667006, Olfr722, Olfr723
Upstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
Downstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366B16.T7 (MSMg01no366_b16.b1)MSMg01-366B16.TJ (MSMg01no366_b16.g1)
ACCAG473899AG473900
length782777
length of high quality
(start - end)		461 (51 - 511)429 (81 - 509)
definitionCHROMAT_FILE: MSMg01no366_b16.b1 PHD_FILE: MSMg01no366_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:50 2005CHROMAT_FILE: MSMg01no366_b16.g1 PHD_FILE: MSMg01no366_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(50,408,408 - 50,408,862)(50,574,438 - 50,574,813)
sequence
NAATATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGA
TCCGCGGAATTCACTTTTTTTTTTTACATGTCTACATTGTTTAACAATTA
TTCCAGAATCACTCAGATGAATCTTCTGGCTTCTTTATTCTACTTCCCTT
CTCCTCCTAAAAAAAACTTTTCATAAATGAAGGAGCAAAATATTGCATGA
CTTATATTATCTTTTAAAAAATGCACTGTTTCACCTCTTACCCACTCTTT
TGCTGTCCTTAGGCCCTGAATTCCACCATTCAACTGTAATAAATGGAATC
TTGTCCTTTGCAATGAAGAGCCTAGATAGGAGAGGGAGGACTGAGGCAGA
TGCAGAGGTGTCTAAAATAGTGCAGTCCTTTCATAGCATCTTTAAAAGAT
AAACTCTCGGTTGGAAACATTTACATAAAAGAAATCTTCATTTTACAGGC
ATGAATGTGTTCTTGTGCAGTGGGTTATAAATTCTCCTTTTNAAAAGTCT
TCAACATCGAAGGTGTCATGTTCCTCAATGAATAAATTCTTTCATTAAAA
ATGAAATTTGGAAACTATGTTTCCCATAGCCCCCCAAGATTCACACATGT
TTCAGAACATGTTCTTATGCCTACCTTTGTGTGTGTGTGNGTGTNNNTNN
NCCCTTTTTTTTTTTGCNCGCNTTGGCCCAACACGATTTTCCCACCGTAC
CTTTTTCCCCAACTCCCACCTCGCCGGTCTCCCCCTTTTTCATCCCCCTC
CTTTTCCATTCTTATCTCCTCCTTATTTTTAT

NNTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCAAGGCTGACCTTTG
TACTCTTGCTTAACTAATTTCTCATGCTTGCACCTTCAGGTTCACACACA
TCTCTACAATGGAGTTCTGTCTTAGGTTTTGCTGCTTTGATAAAACACTG
TGACCAACAGCAAATACAGGAGGAAAGCCTTCAGTTTGTCTTACACCTCT
TAAGTACACACTCTTTACCTGAAGGAAGACAAGACAGAAGCCTAGGGACA
GGAACTAGAGCATGGATGAACACTGCTTACTAGAATTCAGTTTGCTGGTA
TTTTATTGAGACTGTTTCCCTTTATGCTCATCAGACTTATTGTCTCTTAA
CTGTCTTTGTTTTTGTTCCAAACTGCTTTTGTTATTGAAGTAATGAAGGC
ATTGTTGAACACTTTTTGGTTGCAATCTCTATATACATAATTTATGAAGG
TCTGGTTGAACTTTGCTGTAAATCCATCTAGGACTAGATTTTGGTGCATG
TTTTAGACGTCTCTTGTAAAGTCTTGTTCAAAAACTCACAAGAGATTCTT
GTGGCCAAATTGGAATATTAAGGGAACCTCCAGCCCTTGAAGGAAAACCG
TCCGCCCCAAAAAATAATTATTTATATTTAAAACCCATTTTCCCCTTATT
ATTTAGAAAAAAAAAAATATGGGCAAAAAAATAATATCGCCCCAATTTTT
TGTATAGTTTTTTTTTATTTTTAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_b16.b1 MSMg01no366_b16.b1 CHROMAT_FILE:
MSMg01no366_b16.b1 PHD_FILE: MSMg01no366_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:50 2005
         (461 letters)



>mm_chr14_50408202_50409062
          Length = 861

 Score =  874 bits (452), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcactttttttttttacatgtctacattgtttaacaattattccagaatcactcag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactttttttttttacatgtctacattgtttaacaattattccagaatcactcag 266

                                                                       
Query: 67  atgaatcttctggcttctttattctacttcccttctcctcctaaaaaaaacttttcataa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgaatcttctggcttctttattctacttcccttctcctcctaaaaaaaacttttcataa 326

                                                                       
Query: 127 atgaaggagcaaaatattgcatgacttatattatcttttaaaaaatgcactgtttcacct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgaaggagcaaaatattgcatgacttatattatcttttaaaaaatgcactgtttcacct 386

                                                                       
Query: 187 cttacccactcttttgctgtccttaggccctgaattccaccattcaactgtaataaatgg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttacccactcttttgctgtccttaggccctgaattccaccattcaactgtaataaatgg 446

                                                                       
Query: 247 aatcttgtcctttgcaatgaagagcctagataggagagggaggactgaggcagatgcaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatcttgtcctttgcaatgaagagcctagataggagagggaggactgaggcagatgcaga 506

                                                                       
Query: 307 ggtgtctaaaatagtgcagtcctttcatagcatctttaaaagataaactctcggttggaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtgtctaaaatagtgcagtcctttcatagcatctttaaaagataaactctcggttggaa 566

                                                                       
Query: 367 acatttacataaaagaaatcttcattttacaggcatgaatgtgttcttgtgcagtgggtt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acatttacataaaagaaatcttcattttacaggcatgaatgtgttcttgtgcagtgggtt 626

                                              
Query: 427 ataaattctccttttnaaaagtcttcaacatcgaa 461
           ||||||||||||||| |||||||||||||||||||
Sbjct: 627 ataaattctccttttaaaaagtcttcaacatcgaa 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_b16.g1 MSMg01no366_b16.g1 CHROMAT_FILE:
MSMg01no366_b16.g1 PHD_FILE: MSMg01no366_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:50 2005
         (429 letters)



>mm_chr14_50573985_50574813
          Length = 829

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Minus

                                                                       
Query: 54  cttcaggttcacacacatctctacaatggagttctgtcttaggttttgctgctttgataa 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 cttcaggttcacacacatctctacaatggagttctgtcttaggttttgctgctttgataa 770

                                                                       
Query: 114 aacactgtgaccaacagcaaatacaggaggaaagccttcagtttgtcttacacctcttaa 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aacactgtgaccaacagcaaatacaggaggaaagccttcagtttgtcttacacctcttaa 710

                                                                       
Query: 174 gtacacactctttacctgaaggaagacaagacagaagcctagggacaggaactagagcat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtacacactctttacctgaaggaagacaagacagaagcctagggacaggaactagagcat 650

                                                                       
Query: 234 ggatgaacactgcttactagaattcagtttgctggtattttattgagactgtttcccttt 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggatgaacactgcttactagaattcagtttgctggtattttattgagactgtttcccttt 590

                                                                       
Query: 294 atgctcatcagacttattgtctcttaactgtctttgtttttgttccaaactgcttttgtt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atgctcatcagacttattgtctcttaactgtctttgtttttgttccaaactgcttttgtt 530

                                                                       
Query: 354 attgaagtaatgaaggcattgttgaacactttttggttgcaatctctatatacataattt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attgaagtaatgaaggcattgttgaacactttttggttgcaatctctatatacataattt 470

                           
Query: 414 atgaaggtctggttga 429
           ||||||||||||||||
Sbjct: 469 atgaaggtctggttga 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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