BAC Information

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BAC

Clone NameMSMg01-367A10
Chromosome14 (Build37)
Map Location 89,913,793 - 90,075,595
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A10.T7 (MSMg01no367_a10.b1)MSMg01-367A10.TJ (MSMg01no367_a10.g1)
ACCAG474596AG474597
length777746
length of high quality
(start - end)		487 (48 - 534)529 (57 - 585)
definitionCHROMAT_FILE: MSMg01no367_a10.b1 PHD_FILE: MSMg01no367_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:04 2005CHROMAT_FILE: MSMg01no367_a10.g1 PHD_FILE: MSMg01no367_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,075,113 - 90,075,595)(89,913,793 - 89,914,321)
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGGAATTCCTTCTGAAAGCATTTAATGACTCTACCACAATT
AACCTTCTTGAAACAAGCTAATAAAACAATATTGCAGTGGCTACATTAGT
CAAGAATGATTGTCCAACAGAATTATACTTTAGACTTAATATTTATTTCT
TGCAAAGATTATTTTCTCAAAGAAAACAAAACAAAATATACTCATAACGA
AACACATAATTAAATACCTGCTACATAGGAAATAACTTGACAGAAAAGAT
TTTTTTAATTATATAGTGAAAAGGGAAATGTAAATAGTAGATAAATAATT
ACAGGTGGCCAAACAAATAACCTTTAATAGCACACATAAAGCACACATCA
ATCTGTTACTGACCACTTTTCATAGTAATTTTGTACATGTATATATCCAA
TTTTTATCTACAAAATACATATATATTGGGTAAATATCANAAAGCTTATA
AAATTTGTAATATAATCTCTCAGATAAGTGAATGTTAATACTTGTTTTAT
TTCAGNATTAGTTAATTTTCTTGTCTTGAAAAATATTTTTTGTGTATTTT
GTCCACTATATATAACAATATATGCTACATGTGTAGAAGACTTTTATAGG
CACCTTTTTCTACTTAAAAAACATTTTATATTTAATGGAATTTAAAAAAC
TGCCCCGATTTACCCAGCAAGAAAAAAAGACCAGGCCCCAATTTTGAAAT
TTATTTTTAAAAGGGAGGACACCCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCAGAGACCCTCTCAGCCCAGAATTTCTGCCTTTCTGTTCCT
TCCTAGCAATATAGGCCAGCAGCTTTTTTATTAAAGCTAATCAGAGAATG
CCTTAGGCAGGGGAGAAAGAACAGGGACACACCTTCACACAGTGCACTCC
AACACATCTTCAGCAATCACATCTGCTGTGAATTCCTGGGTGCAATGGAC
CTGTTTTGTACAGAAGACACTGTTTCTTCCCCAAACCATAGCTCACACTT
TTTTTCTGCCTCTTTTGCTATAATGTTTCCTAACATTTTGGGAGAAGGGA
TAGACAATAGATGTTCCACATTTGGGTGGGCACTCCAGAGATGGCTGTTT
TCTGAACATTGATCAAATTTGAGTCTCTGTATTAACTGTTACCCTTCACA
AAAATTTTCTCTTAATAAGGGTGCTTGTTGGTATAAATTGAGTATAGCCC
TAAATATCTTGAGACAGTTTGATTCTATGCCCATTTACCAATAAAAAACA
AAAGCATTGAAAAAACTCTCCAGCATTGAATTCATGTTAATATAGGAGTA
TAATTCTTTATGTAGAGAGTCTTTTAAAAACTGAATTAATATATGTATAT
CTTTTCTGAAATTTATTGATACATATTTTCATTTATGAATTGCTCCATTT
AAATTTTGAAAGGGCAGGAGGGGTGCCACCTTGGTATTATGGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a10.b1 MSMg01no367_a10.b1 CHROMAT_FILE:
MSMg01no367_a10.b1 PHD_FILE: MSMg01no367_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:04 2005
         (487 letters)



>mm_chr14_90074909_90075795
          Length = 887

 Score =  928 bits (480), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggaattccttctgaaagcatttaatgactctaccacaattaaccttcttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattctttggaattccttctgaaagcatttaatgactctaccacaattaaccttcttga 628

                                                                       
Query: 65  aacaagctaataaaacaatattgcagtggctacattagtcaagaatgattgtccaacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aacaagctaataaaacaatattgcagtggctacattagtcaagaatgattgtccaacaga 568

                                                                       
Query: 125 attatactttagacttaatatttatttcttgcaaagattattttctcaaagaaaacaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attatactttagacttaatatttatttcttgcaaagattattttctcaaagaaaacaaaa 508

                                                                       
Query: 185 caaaatatactcataacgaaacacataattaaatacctgctacataggaaataacttgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caaaatatactcataacgaaacacataattaaatacctgctacataggaaataacttgac 448

                                                                       
Query: 245 agaaaagatttttttaattatatagtgaaaagggaaatgtaaatagtagataaataatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaaaagatttttttaattatatagtgaaaagggaaatgtaaatagtagataaataatta 388

                                                                       
Query: 305 caggtggccaaacaaataacctttaatagcacacataaagcacacatcaatctgttactg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caggtggccaaacaaataacctttaatagcacacataaagcacacatcaatctgttactg 328

                                                                       
Query: 365 accacttttcatagtaattttgtacatgtatatatccaatttttatctacaaaatacata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accacttttcatagtaattttgtacatgtatatatccaatttttatctacaaaatacata 268

                                                                       
Query: 425 tatattgggtaaatatcanaaagcttataaaatttgtaatataatctctcagataagtga 484
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatattgggtaaatatcaaaaagcttataaaatttgtaatataatctctcagataagtga 208

              
Query: 485 atg 487
           |||
Sbjct: 207 atg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_a10.g1 MSMg01no367_a10.g1 CHROMAT_FILE:
MSMg01no367_a10.g1 PHD_FILE: MSMg01no367_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:04 2005
         (529 letters)



>mm_chr14_89913593_89914521
          Length = 929

 Score = 1023 bits (529), Expect = 0.0
 Identities = 529/529 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagagaccctctcagcccagaatttctgcctttctgttccttcctagcaatataggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagagaccctctcagcccagaatttctgcctttctgttccttcctagcaatataggc 260

                                                                       
Query: 61  cagcagcttttttattaaagctaatcagagaatgccttaggcaggggagaaagaacaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcagcttttttattaaagctaatcagagaatgccttaggcaggggagaaagaacaggg 320

                                                                       
Query: 121 acacaccttcacacagtgcactccaacacatcttcagcaatcacatctgctgtgaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacaccttcacacagtgcactccaacacatcttcagcaatcacatctgctgtgaattcc 380

                                                                       
Query: 181 tgggtgcaatggacctgttttgtacagaagacactgtttcttccccaaaccatagctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtgcaatggacctgttttgtacagaagacactgtttcttccccaaaccatagctcac 440

                                                                       
Query: 241 actttttttctgcctcttttgctataatgtttcctaacattttgggagaagggatagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttttttctgcctcttttgctataatgtttcctaacattttgggagaagggatagaca 500

                                                                       
Query: 301 atagatgttccacatttgggtgggcactccagagatggctgttttctgaacattgatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagatgttccacatttgggtgggcactccagagatggctgttttctgaacattgatcaa 560

                                                                       
Query: 361 atttgagtctctgtattaactgttacccttcacaaaaattttctcttaataagggtgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgagtctctgtattaactgttacccttcacaaaaattttctcttaataagggtgctt 620

                                                                       
Query: 421 gttggtataaattgagtatagccctaaatatcttgagacagtttgattctatgcccattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttggtataaattgagtatagccctaaatatcttgagacagtttgattctatgcccattt 680

                                                            
Query: 481 accaataaaaaacaaaagcattgaaaaaactctccagcattgaattcat 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaataaaaaacaaaagcattgaaaaaactctccagcattgaattcat 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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