BAC Information

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BAC

Clone NameMSMg01-367C16
Chromosome14 (Build37)
Map Location 52,755,644 - 52,921,014
singlet/doubletdoublet
Overlap geneRpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3
Upstream geneRnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneSall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C16.T7 (MSMg01no367_c16.b1)MSMg01-367C16.TJ (MSMg01no367_c16.g1)
ACCAG474704AG474705
length778759
length of high quality
(start - end)		419 (47 - 465)535 (76 - 610)
definitionCHROMAT_FILE: MSMg01no367_c16.b1 PHD_FILE: MSMg01no367_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:14 2005CHROMAT_FILE: MSMg01no367_c16.g1 PHD_FILE: MSMg01no367_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,920,600 - 52,921,014)(52,755,644 - 52,756,178)
sequence
NTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGAGTCTAATATCCACCAGCACAGTCCTGCTGAAGGCAAGTA
TTTCTCTTAACACTGTTGTAGGTGTGCTATGTAGCAATTATTACTTACAT
TTCTTTGTATACTTTTAGCTAAGGCCAATTATTTTAAACCATCCAAACCT
TTACTGTGCTTCCATGACCTTTTCATGTGTACAGTGGTGGAGTAAGATCA
TATAGTGGGAATATGCTGGGACCATCATTTGCTGATCAGGCCTTTGGCCA
AGTATTCCAAGGGCCTGGTGTTTATGTTTATGAAGCATATTCTCCATGGC
CAATAGCCATGTTTCATTAAAATTTCAGATCCATCCCTGGGAAACATAAT
CACATCCCAGGGTTTTTGTTTGTTTGGGTTTTTGTTTTGTTTTTTTTTGG
TTTTTTTTTTTTTTTTTTTTTNNTNNNNNNNNNNNNNTNTTTTTTTTTTT
TTTTTTCTTTTCTCTTTCCTATCTCTCCCTCTTTTCCTCCCTTCTTTTTT
CTTCTTTCAACTCTTATTTCTTCTCTTCCTTCTATCATCTTCTTATTCCC
TTTTTTTCTTTTTTATTCTCATCCCTTTTTCCTCTATTCATATTCTTTCT
CCCATTCACCTCTATTCCCTCTTCATATTTTCTATTTAATATTTACCCAC
CTTCTTTTATATTTTCCCTCCTCCCTTATCCCCCTTCCCTTCTTCCTTTC
TTCCCTTCTCCTTTTACCTCTCCTATTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGAGTTTGAGTCTGGCCT
CAAACTCAGAGATCTACCTACCTCTGTCTCCCAAGTGCTGGAGTTAATTA
AAAGTGTGTGCCACCACTACTGCTTTTGGTCAGGAAGCTTTTAATGTCAA
TGTCATTCCATTTGTATAAATGACTAAGACCTGGTCTTGTGTGTTTTACA
CTCAAGGCAGGTCTAACAGCTAAATACCATGGGATGGAGTTGTAGGTGTT
AAAAAGCTTGTTTTCATTCTTGAGTATAGCTGGTAGTTTAAAGTTCTCTA
AAGTAGCCACTGGCAAAGGGATATAAGGGGACAAGGTGAGAAAAGAAAGC
TCTTGATTCTCAGTTCTAACTCAGGAGGTCTGGGCGTGTCCTAACACTTC
AGGCCCTGGCCAAAGGAAGCCATCATACGGGAGACGTTCCTTGAGAAATG
CATGATTAAGGTGCTAGCGTAGTGGAACCCTCAAGACTTAAGCAGACGTG
ACACTGAGTAACTCCTCAATGCCACCCAAAAGTTCCGAAGCAGTTAGCAA
GTGACAGTTACAAATAAAGCCTGGGCTGAAAAAAAAACAAACAAAACCAA
ACATGTGGAGAAAGGAATTATCCGCTAGGGCCCAGATATGCTGAAACTGT
GTAACAAAGATGCCGGATCTAACCCCTTTGGAGAATCCTTCTGAACCCAA
TCTGGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c16.b1 MSMg01no367_c16.b1 CHROMAT_FILE:
MSMg01no367_c16.b1 PHD_FILE: MSMg01no367_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:14 2005
         (419 letters)



>mm_chr14_52920433_52921251
          Length = 819

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagagtctaatatccaccagcacagtcctgctgaaggcaagtatttctcttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaattccaagagtctaatatccaccagcacagtcctgctgaaggcaagtatttctcttaa 523

                                                                       
Query: 65  cactgttgtaggtgtgctatgtagcaattattacttacatttctttgtatacttttagct 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cactgttgtaagtgtgctatgtagcaattattacttacatttctttgtatacttttagct 463

                                                                       
Query: 125 aaggccaattattttaaaccatccaaacctttactgtgcttccatgaccttttcatgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaggccaattattttaaaccatccaaacctttactgtgcttccatgaccttttcatgtgt 403

                                                                       
Query: 185 acagtggtggagtaagatcatatagtgggaatatgctgggaccatcatttgctgatcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acagtggtggagtaagatcatatagtgggaatatgctgggaccatcatttgctgatcagg 343

                                                                       
Query: 245 cctttggccaagtattccaagggcctggtgtttatgtttatgaagcatattctccatggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctttggccaagtattccaagggcctggtgtttatgtttatgaagcatattctccatggc 283

                                                                       
Query: 305 caatagccatgtttcattaaaatttcagatccatccctgggaaacataatcacatcccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caatagccatgtttcattaaaatttcagatccatccctgggaaacataatcacatcccag 223

                                                                  
Query: 365 ggtttttgtttgtttgggtttttgttttgtttttttttggttttttttttttttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggtttttgtttgtttgggtttttgttttgtttttttttggttttttttttttttt 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_c16.g1 MSMg01no367_c16.g1 CHROMAT_FILE:
MSMg01no367_c16.g1 PHD_FILE: MSMg01no367_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:14 2005
         (535 letters)



>mm_chr14_52755444_52756378
          Length = 935

 Score = 1035 bits (535), Expect = 0.0
 Identities = 535/535 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagagtttgagtctggcctcaaactcagagatctacctacctctgtctcccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagagtttgagtctggcctcaaactcagagatctacctacctctgtctcccaag 260

                                                                       
Query: 61  tgctggagttaattaaaagtgtgtgccaccactactgcttttggtcaggaagcttttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggagttaattaaaagtgtgtgccaccactactgcttttggtcaggaagcttttaat 320

                                                                       
Query: 121 gtcaatgtcattccatttgtataaatgactaagacctggtcttgtgtgttttacactcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaatgtcattccatttgtataaatgactaagacctggtcttgtgtgttttacactcaa 380

                                                                       
Query: 181 ggcaggtctaacagctaaataccatgggatggagttgtaggtgttaaaaagcttgttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaggtctaacagctaaataccatgggatggagttgtaggtgttaaaaagcttgttttc 440

                                                                       
Query: 241 attcttgagtatagctggtagtttaaagttctctaaagtagccactggcaaagggatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcttgagtatagctggtagtttaaagttctctaaagtagccactggcaaagggatata 500

                                                                       
Query: 301 aggggacaaggtgagaaaagaaagctcttgattctcagttctaactcaggaggtctgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggacaaggtgagaaaagaaagctcttgattctcagttctaactcaggaggtctgggc 560

                                                                       
Query: 361 gtgtcctaacacttcaggccctggccaaaggaagccatcatacgggagacgttccttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtcctaacacttcaggccctggccaaaggaagccatcatacgggagacgttccttgag 620

                                                                       
Query: 421 aaatgcatgattaaggtgctagcgtagtggaaccctcaagacttaagcagacgtgacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcatgattaaggtgctagcgtagtggaaccctcaagacttaagcagacgtgacact 680

                                                                  
Query: 481 gagtaactcctcaatgccacccaaaagttccgaagcagttagcaagtgacagtta 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtaactcctcaatgccacccaaaagttccgaagcagttagcaagtgacagtta 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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