BAC Information

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BAC

Clone NameMSMg01-367I17
Chromosome14 (Build37)
Map Location 56,176,262 - 56,176,687
singlet/doubletsinglet
Overlap genenone
Upstream geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2
Downstream geneWdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I17.T7 (MSMg01no367_i17.b1)MSMg01-367I17.TJ (MSMg01no367_i17.g1)
ACCAG474987AG474988
length729756
length of high quality
(start - end)		470 (46 - 515)470 (78 - 547)
definitionCHROMAT_FILE: MSMg01no367_i17.b1 PHD_FILE: MSMg01no367_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:44 2005CHROMAT_FILE: MSMg01no367_i17.g1 PHD_FILE: MSMg01no367_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCCCAGAGGATCCGCGGAATTCACCCTATTCTGGAAATGCTG
GGGTACATTTGTGTAGGTCACATTGCTTAGAACAAGAGTTCAAGAAACTA
CACAAAAATTTACAGAAATGTCTAAGTGATTATTATTATTATTAACTAAA
AACCAATCAGCTGGGTACACCTGTGAGGGATTTTTCTTTAATTAAATCAT
TTGAAGTGGGAAGATCCACTTTTAATCTGGGCCATGCCTTCTGGTGGAAG
CCTATATCGCAGCCATGAAAGAAAGAAATTCTCCCTCCTTGCCTGCTTGT
CCTAACTTTGCCTGGCAAGTCCATTCCTTCGCTGTCTTTAGAGCCTGCTT
CTTCAGGATTCCAGCCTAGAGGATTTGGTACCAGAAGTGGTTCTAGAGCA
GCCGAAGTATAAGGAAAAAATTTTTTAAGTATCTGGAATAGGCTTTCCAA
TTCGCTGACACCTACAGTTACTGAAACCTTCCCTAGAAGCCCAGAGAGTA
CTANNAGCCCAAAGTGTTATCCGTTTTACAAACTTTAAGAGACAAATGCA
TTTGAATTTCCTGATTCATCAATTGTGAGAGGCACCAGATTTTGGTGAAT
TTGTCTAGAAAACTTTTACCAACTTGTGGGAAAATAAGGAAAAGAAGCTG
CTATTTGGTTGCCCTCACACTCTGGAAAATGACAAAAAAAAAAAGAGCTC
CGTGAAAAATAAAAACCTAGCCCTCCGAA

TCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGCCTGCTTCTTAGCCCTGG
CATTTCAGACATGTGACAAGGGCAGTGCTGGACTTTCCAGGCTGGTACTG
GGGATGAGAATGCAGGTGCCCCTGCTTGTATTGACTGAACCACCTTCCCA
GCCTCTTTCACCTGTTTTGATGGCAGAGTTGCACTATGAGTAGGTTTCAG
TAAGATCTGTAAGTGCTAAGAAGAGGAGAAGTATCAATAAATTAATAATA
TGTAGTTGGGCAGTGGTGGCGCACGCCTTTAGTCCCAGCACTTCGGAGGC
AGAAGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG
TTCCAGGACAGCCAGAGCTACACAGAGAAACCCTATCTCGGAAAAAAAAA
ACAAAAAACAAAAAAATAAAAAAATAAAAAATAATATGTATATAAGAGTC
AGGAGGGAGGTGGTAGCACCCCCGTGCCTAAAGGTCACTCCGACATGTGT
TGTTGGCCTTTCAATGCTTGCTAAGTTTGTAAAGTGCTTTGAATTTGAGC
AGCTTCTGCTGTCCCGAGTTACACTAAGTCACTAACCACAGAGAGGTTTC
TCTTCTGTCATTACCCATTTTAAGACCAAGTTGGCTAATGATTAAGTATA
TATCATTTGGGTGACTTCCTGTTCCCCCATGTTTTGCTCGTCTTTTTTGG
TTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i17.g1 MSMg01no367_i17.g1 CHROMAT_FILE:
MSMg01no367_i17.g1 PHD_FILE: MSMg01no367_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:44 2005
         (470 letters)



>mm_chr14_56176262_56177131
          Length = 870

 Score =  795 bits (411), Expect = 0.0
 Identities = 425/433 (98%), Gaps = 7/433 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcggcctgcttcttagccctggcatttcagacatgtgacaagggcagtgctggactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcggcctgcttcttagccctggcatttcagacatgtgacaagggcagtgctggactttc 367

                                                                       
Query: 61  caggctggtactggggatgagaatgcaggtgcccctgcttgtattgactgaaccaccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 366 caggctggtactggggatgagaatgcaggtgcccctgcttgtattgactgagccaccttc 307

                                                                       
Query: 121 ccagcctctttcacctgttttgatggcagagttgcactatgagtaggtttcagtaagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccagcctctttcacctgttttgatggcagagttgcactatgagtaggtttcagtaagatc 247

                                                                       
Query: 181 tgtaagtgctaagaagaggagaagtatcaataaattaataatatgtagttgggcagtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtaagtgctaagaagaggagaagtatcaataaattaataatatgtagttgggcagtggt 187

                                                                       
Query: 241 ggcgcacgcctttagtcccagcacttcggaggcagaagcaggcagatttctgagtttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgcacgcctttagtcccagcacttcggaggcagaagcaggcagatttctgagtttgag 127

                                                                       
Query: 301 gccagcctggtctacagagtgagttccaggacagccagagctacacagagaaaccctatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gccagcctggtctacagagtgagttccaggacagccagagctacacagagaaaccctatc 67

                                                                       
Query: 361 tcggaaaaaaaaaacaaaaaacaaaaaaataaaaaaataaaaaataatatgtatataaga 420
           ||||||||||||||      |||||||| |||||||||||||||||||||||||||||||
Sbjct: 66  tcggaaaaaaaaaa------acaaaaaa-taaaaaaataaaaaataatatgtatataaga 14

                        
Query: 421 gtcaggagggagg 433
           |||||||||||||
Sbjct: 13  gtcaggagggagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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