BAC Information

Click to search

BAC

Clone NameMSMg01-367I18
Chromosome14 (Build37)
Map Location 47,815,113 - 47,908,673
singlet/doubletdoublet
Overlap geneWdhd1, Socs4
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
Downstream geneLOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I18.T7 (MSMg01no367_i18.b1)MSMg01-367I18.TJ (MSMg01no367_i18.g1)
ACCAG474989AG474990
length780738
length of high quality
(start - end)		393 (50 - 442)436 (58 - 493)
definitionCHROMAT_FILE: MSMg01no367_i18.b1 PHD_FILE: MSMg01no367_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:44 2005CHROMAT_FILE: MSMg01no367_i18.g1 PHD_FILE: MSMg01no367_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,815,113 - 47,815,501)(47,908,238 - 47,908,673)
sequence
NCCCTCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATGAATAACCATGCAGTTTGATTTTGTATGTAGAGCACCA
GTCATTGCAGACATACTAACCTCCTACTGTACCCCACAGCTCAGTCCACT
AGGCACCCCAGTCCTCAGGGAGGTGGATTTGAGGCCTTAGGCTCCACCTA
CTCACATTTGACACCTCCTGTATAAACTCTCCTTTGTAAAACTGGTCATT
TCAGTGAATGGCATACGGTTAGATTTCCCAAGCAGCTTAAAGACGCAGGA
GGCAGAAAAGACGCTGGAGGCTGATGTCAACAGACTGGACTATTTATTTC
AAACAGTGAAGGACAGACACTCTCCCACAGGAAAGAGGTGTCTGTGAAAG
GGGTGGGGGACACTTGGAGTTTTTATAGGAGGTTTGGAGGTTGGNNNTAT
GTCTTTTTTTGGTTTTTCTTCTTCTTTATATGTCCCGATCTACCTATATG
TGTTTACCTGTTAAAATATTTTGTATCTTCCCTTTTTGTTCTACCTCTTT
TTTTTCTCCCTCCATTTTATTTCCGTTCTCTTCATTCCTAATTTTTTTAT
TTCCTTCTTTGACTTTTGTGTCCCTCCCTTTTGTGTCTACATCTTTATTT
TAGGGCTTTTTCCCTTATTTTTTTTTATTTTTCTATCTTTTTATTTTACC
ACTCTTATTTTTTTTTCCTACTTCCCCTTTCCTTTTTACCATCTTCCTTT
TCTTACCTTCTCCTTTATCTTCTCCTATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTATAATTAGAAATAGTTACGAGCTAGTGGTTGAGAACTAAT
AACCAGTATTGTTTCTTCTCTTGTTTCCATTTCTACTGATTCAAACAAGA
ACAATTTTAAGTTGTAAAGTTTTTAGAATTTAAGTAAATAATTACCACTA
AGCAATGGGAATGCCAAGTAAATATTCTTAAATGAGTTTTGCCAATTAAT
TTCAGTAAGTGGTTAATTACATCATTATCAATCTATGTAGCTTTTAGAAG
TATTTTACTCATATAATACTCTTACATTCTTGATCACTTGAAAATAAGTA
GGTAAATTTCTACAGAGCATTCCTTGGCTACACATACTAGAATTTATAAT
GAATTTACAGAACTATTTCTAAAAGTTTTTTAGTCATTTTTAAATTCTAT
TTGTGTAGCAGTGTGTTTATGCGCGTGCATGCAGGTGCCTGAGTAGGTTA
GAAGCATCAGGTCCCCTGAAACTGTAGCTATAGGCAGTTGTGAGCCTGCG
GGGTGTGTGGCAAGAAACAAACCTAGGGCCTCTGGAGAAGAATACATCTC
TTATTTTCTGAGCCGGTTCTCCACCCCCTTTATTTTTATTTGAGCAGAAG
TAACTTAGATTTGAAGGCCCGGCCCATTACTCCAAAATTTGCAATAGAAG
CTAATTGGGTTTCAAAAAACATCCCTGTTAGCAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i18.b1 MSMg01no367_i18.b1 CHROMAT_FILE:
MSMg01no367_i18.b1 PHD_FILE: MSMg01no367_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:44 2005
         (393 letters)



>mm_chr14_47814909_47815701
          Length = 793

 Score =  745 bits (385), Expect = 0.0
 Identities = 388/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgaataaccatgcagtttgattttgtatgtagagcaccagtcattgcagaca 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgaagaaccatgcagtttgattttgtatgtagagcaccagtcattgcagaca 264

                                                                       
Query: 65  tactaacctcctactgtaccccacagctcagtccactaggcaccccagtcctcagggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactaacctcctactgtaccccacagctcagtccactaggcaccccagtcctcagggagg 324

                                                                       
Query: 125 tggatttgaggccttaggctccacctactcacatttgacacctcctgtataaactctcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggatttgaggccttaggctccacctactcacatttgacacctcctgtataaactctcct 384

                                                                       
Query: 185 ttgtaaaactggtcatttcagtgaatggcatacggttagatttcccaagcagcttaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtaaaactggtcatttcagtgaatggcatacggttagatttcccaagcagcttaaaga 444

                                                                       
Query: 245 cgcaggaggcagaaaagacgctggaggctgatgtcaacagactggactatttatttcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgcaggaggcagaaaagacgctggaggctgatgtcaacagactggactatttatttcaaa 504

                                                                       
Query: 305 cagtgaaggacagacactctcccacaggaaagaggtgtctgtgaaaggggtgggggacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtgaaggacagacactctcccacaggaaagaggtgtctgtgaaaggggtgggggacac 564

                                        
Query: 365 ttggagtttttataggaggtttggaggtt 393
           |||||||||||||||||||||||||||||
Sbjct: 565 ttggagtttttataggaggtttggaggtt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_i18.g1 MSMg01no367_i18.g1 CHROMAT_FILE:
MSMg01no367_i18.g1 PHD_FILE: MSMg01no367_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:45 2005
         (436 letters)



>mm_chr14_47908038_47908873
          Length = 836

 Score =  843 bits (436), Expect = 0.0
 Identities = 436/436 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataattagaaatagttacgagctagtggttgagaactaataaccagtattgtttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tttataattagaaatagttacgagctagtggttgagaactaataaccagtattgtttctt 577

                                                                       
Query: 61  ctcttgtttccatttctactgattcaaacaagaacaattttaagttgtaaagtttttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcttgtttccatttctactgattcaaacaagaacaattttaagttgtaaagtttttaga 517

                                                                       
Query: 121 atttaagtaaataattaccactaagcaatgggaatgccaagtaaatattcttaaatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atttaagtaaataattaccactaagcaatgggaatgccaagtaaatattcttaaatgagt 457

                                                                       
Query: 181 tttgccaattaatttcagtaagtggttaattacatcattatcaatctatgtagcttttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttgccaattaatttcagtaagtggttaattacatcattatcaatctatgtagcttttag 397

                                                                       
Query: 241 aagtattttactcatataatactcttacattcttgatcacttgaaaataagtaggtaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtattttactcatataatactcttacattcttgatcacttgaaaataagtaggtaaat 337

                                                                       
Query: 301 ttctacagagcattccttggctacacatactagaatttataatgaatttacagaactatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttctacagagcattccttggctacacatactagaatttataatgaatttacagaactatt 277

                                                                       
Query: 361 tctaaaagttttttagtcatttttaaattctatttgtgtagcagtgtgtttatgcgcgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctaaaagttttttagtcatttttaaattctatttgtgtagcagtgtgtttatgcgcgtg 217

                           
Query: 421 catgcaggtgcctgag 436
           ||||||||||||||||
Sbjct: 216 catgcaggtgcctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |