BAC Information

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BAC

Clone NameMSMg01-367N22
Chromosome14 (Build37)
Map Location 111,975,158 - 111,975,584
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367N22.T7 (MSMg01no367_n22.b1)MSMg01-367N22.TJ (MSMg01no367_n22.g1)
ACCAG475235AG475236
length789765
length of high quality
(start - end)
490 (47 - 536)469 (59 - 527)
definitionCHROMAT_FILE: MSMg01no367_n22.b1 PHD_FILE: MSMg01no367_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:09 2005CHROMAT_FILE: MSMg01no367_n22.g1 PHD_FILE: MSMg01no367_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTTGTCGAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGCTTCATTTCTATTCCATTGGG
CTACTTGCCTGTCCCCTTACCAGAACCATGGCGGTTTTAATATAAATGCC
CCGGAGAAAAACTTTTAGTTTGGTTGGGTGATTCCCCCCCATATTTTTTT
ACCTTTTGAAAAATTTTTCCTACCCACATCTTTTTGTTATCTCAAAAATA
TCGTATTTGCCCCCTCTCTTCCTGTAAATAAAAGTTTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTGTCAAGAATATGAAAGGTTGTTGTTGTTGTTGTTGTTTT
AATCTGATATAGAAGATCAAAGTAACGTACTGACATTTATGCATACTTAT
TAACTTTAAAGAAATATATAGGCTAAACAGAAAATAGACAAAATTGAAAA
GAAACATCAGAATTTCATTTTGTAATTTTTACTTTTTAATTTCATTTTCT
CCTTTATTAAAAATATATTCTTTTCTCATACAATATATCCTGATTACAGT
TTCCCTTCCATTTCTTCTCCCAGATTGTTCCTATCTCTTCTCCAAGCCTG
ACCCCTTTCTGTCTCCTATTAGAAAAATACCTCTCCTTGTATCTCATCTT
CACCCCATTCTCCGCTCCAGCCCCTCTCCCAGCCATTTCCCTCCCTTCCT
CTACTTCCAATGACTATTTTATTTCCCCTTCTGAGTAAGATTAGAATATC
TTCCCTTGGATTCTCCTTGCTGTTTTGTTTTGTTTAGTTTCTTTTGGTAT
TTTTTTTCTTTACACTCCAGATTTTATTCCCCTCTCTATCTGCTCTCTGT
TCCATACACCATACCTTCCTCCACCCTCCTTTCTCCACGAGGNTGTCCCC
ACCCACAACCCCCAACACCAGCAGAAACTCTAAACTCCCCTGGAACCTCC
CGGTTCTTTCGAGATAGGGGGCAAAATCTCCTGAATGGAACCCAAACCGG
GGAGTCCCCCTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_n22.g1 MSMg01no367_n22.g1 CHROMAT_FILE:
MSMg01no367_n22.g1 PHD_FILE: MSMg01no367_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:09 2005
         (469 letters)



>mm_chr14_111975158_111976026
          Length = 869

 Score =  762 bits (394), Expect = 0.0
 Identities = 418/430 (97%), Gaps = 9/430 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtcaagaatatgaaaggttgttgtt------gttgttgttgttttaatctgatatag 54
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 427 tctgtcaagaatatgaaaggttgttgttgttgtcgttgttgttgttttaatctgatatag 368

                                                                       
Query: 55  aagatcaaagtaacgtactgacatttatgcatacttattaactttaaagaaatatatagg 114
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagatcaaagtaaagtactgacatttatgcatacttattaactttaaagaaatatatagg 308

                                                                       
Query: 115 ctaaacagaaaatagacaaaattgaaaagaaacatcagaatttcattttgtaatttttac 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctaaacagaaaatagacaaaattgaaaagaaacatcagaatttcattttgtaatttttac 248

                                                                       
Query: 175 tttttaatttcattttctcctttattaaaaatatattcttttctcatacaatatatcctg 234
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 tttttaatttcattttctcctttattaaaaatatattc-tttctcatacaatatatcctg 189

                                                                       
Query: 235 attacagtttcccttccatttcttctcccagattgttcctatctcttctccaagcctgac 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 attacagtttcccttccatttcttctcccagattgttcctatctcttctccaagcctgac 129

                                                                       
Query: 295 ccctttctgtctcctattagaaaaatacctctccttgtatctcatcttcaccccattctc 354
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 128 ccctttctgtctcctattagaaaaatacctctccttgtatctcatctccaccccattctc 69

                                                                       
Query: 355 cgctccagcccctctcccagccatttccctcccttcctctacttccaatgactattttat 414
            |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 68  tgctccagcccctctcccagccatttccctcccttcctctacttccaatgac--ttttat 11

                     
Query: 415 ttccccttct 424
           ||||||||||
Sbjct: 10  ttccccttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)