BAC Information

Click to search

BAC

Clone NameMSMg01-368B02
Chromosome14 (Build37)
Map Location 22,843,456 - 22,844,027
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneVcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503
Downstream geneEG665075, EG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368B02.T7 (MSMg01no368_b02.b1)MSMg01-368B02.TJ (MSMg01no368_b02.g1)
ACCAG475385AG475386
length745731
length of high quality
(start - end)
635 (46 - 680)590 (69 - 658)
definitionCHROMAT_FILE: MSMg01no368_b02.b1 PHD_FILE: MSMg01no368_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:24 2005CHROMAT_FILE: MSMg01no368_b02.g1 PHD_FILE: MSMg01no368_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGAATGCCAGAAGTAGAGGTTTAGAACAGACTGCTGATGGAAA
TCTTGCCCTACCTACAAGATGTTCAAGGATAAAGATGGATAAGGGAATGG
CCAACCAAATGGCTGGCTCAACTTGAGACCCACCAATGGGAGAGAGCCAA
CCCTTGACTTTATTATGATACTCTGCTATGCTTGAAGACAGGAGCCTACC
ATAATTTTCTCCTGAGAGCATCATCCAGAAGCAGATGGAAACCCATGCAG
AGAGCCATGGCCAAACCTCAAGTTGAGCTGGAGAGTCATGTGGAAGAGTA
GGGGATAGAAGTGAGCAAGTCAGGGCTCAAGGACACCACAAGACCTACTG
AGTCATCTAACCCAGTCCCATGGGGGCTCACAGAGACTGAACCACCAACC
AAAGGAAATGCAGGGGCTGGACCTAGGCCCCCTACACATTTGTAGCAGAT
GTGCAGCTTGGCTTTCTTTCATCTGGGTCCCCTAACAATTGGAGTGGGAC
CTGTCTCTGACTCTGTTACCTGCCATTGGATCCTCTTTCCCTAGCTAGAT
TGACTGGTCAGGCCTCAGTGAGAGAGGCTGTTGCCAGTCCTTCTGTGACT
TGATGTCCCAGCGTATGCAGGTACCCAAAGGAGTGGAGTGTCCCCTTCTC
CTCAGAGAAGAGGATGGGTTAATTGGGGAAGAGAGTTGTGAGGGN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCCTGTGTGGAAGTTGAGATTTGGCAACCT
GGGTCCTCACTAGATCTAATCCTTGCCTAGTCTATGAGGATGGGGCTCAG
TGTCCTTACTTAAGGCTAGCTTATCTGCTTTGGATATCACAGAAATTTTA
TGTGTTGATGGCACAAAATGGTGGTGGCATGTGCTGGGTGTTTGGGTGAG
CCCCGTGGACCTGGAGGGTTAATGTGAACTCACAGAACACGCTACAGATT
GAGACCACGTCTGCAGGATTTATTGGGACCTTATAGCCTCAATCTCTTCT
TGGTGTATGCTTTTCATCTCAGCATAGAAACAAAACTCACTTTATTACCT
AAATGCTGCAGAAAATGAATCTAATATAGAAAGGGGACAGACTGCTAGAT
TGAAGCAAGATCCTATTTATTTATTTGTTTATTTATTTATTTATTTATTT
ATTTATTTATTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTATCT
TCCTGAGTCAAAATTATTTTATTGGGCCATTAAGATAATTCAGTGGGTAA
AAGCAGTTACTACCAAGCCTGATTTTGATCCTGGGGATCTATGTGTTGAA
AGGAGAGAACTTTCAGTTGTCTTCTGTCTACTAAGTATGTACGATGGTGC
ACCACATACACACACACACACTCACTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_b02.g1 MSMg01no368_b02.g1 CHROMAT_FILE:
MSMg01no368_b02.g1 PHD_FILE: MSMg01no368_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:24 2005
         (590 letters)



>mm_chr14_22843254_22844243
          Length = 990

 Score = 1009 bits (522), Expect = 0.0
 Identities = 564/588 (95%), Gaps = 16/588 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   ccctgtgtggaagttgagatttggcaacctgggtcctcactagatctaatccttgcctag 62
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccctatgtggaagttgagatttggcaacctgggtcctcactagatctaatccttgcctag 262

                                                                       
Query: 63  tctatgaggatggggctcagtgtccttacttaaggctagcttatctgctttggatatcac 122
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 tctatgaggacggggctcagtgtccttacttaaggctagcttatctgctttggttatcac 322

                                                                       
Query: 123 agaaattttatgtgttgatggcacaaaatggtggtggcatgtgctgggtgtttgggtgag 182
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 agaaattttatgtgttgatggcacaaaatggtgatggcatgtgctgggtgtttgggtgag 382

                                                                       
Query: 183 ccccgtggacctggagggttaatgtgaactcacagaacacgctacagattgagaccacgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccccgtggacctggagggttaatgtgaactcacagaacacgctacagattgagaccacgt 442

                                                                       
Query: 243 ctgcaggatttattgggaccttatagcctcaatctcttcttggtgtatgcttttcatctc 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 ctgcaggatttattgggaccttatagcctcaatctctccttggtgtatgcttttcatctc 502

                                                                       
Query: 303 agcatagaaacaaaactcactttattacctaaatgctgcagaaaatgaatctaatataga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcatagaaacaaaactcactttattacctaaatgctgcagaaaatgaatctaatataga 562

                                                                       
Query: 363 aaggggacagactgctagattgaagcaagatcctatttatttatttgtttatttatttat 422
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaggggacagactgctagatggaagcaagatcctatttatttatttgtttatttatttat 622

                                                                       
Query: 423 ttatttatttatttatttattgcttgcttgcttgcttgcttgcttgcttgcttgctatct 482
           |||||||||||||||||                |||||||| ||||||||||||||||||
Sbjct: 623 ttatttatttatttatt----------------gcttgcttacttgcttgcttgctatct 666

                                                                       
Query: 483 tcctgagtcaaaattattttattgggccattaagataattcagtgggtaaaagcagttac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcctgagtcaaaattattttattgggccattaagataattcagtgggtaaaagcagttac 726

                                                           
Query: 543 taccaagcctgattttgatcctggggatctatgtgttgaaaggagaga 590
           ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 727 taccaagcctgattttgatcctggggatcaatgtgttgaaaggagaga 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)