BAC Information

Click to search

BAC

Clone NameMSMg01-368G19
Chromosome14 (Build37)
Map Location 13,522,579 - 13,523,118
singlet/doubletsinglet
Overlap geneCadps
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368G19.T7 (MSMg01no368_g19.b1)MSMg01-368G19.TJ (MSMg01no368_g19.g1)
ACCAG475655AG475656
length745771
length of high quality
(start - end)
542 (59 - 600)481 (75 - 555)
definitionCHROMAT_FILE: MSMg01no368_g19.b1 PHD_FILE: MSMg01no368_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:51 2005CHROMAT_FILE: MSMg01no368_g19.g1 PHD_FILE: MSMg01no368_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATGCGCGGAATTCAATA
ACTTCCCAAAGCCTTTGACTGGATAGTGGAGGATTAAAAATGGCACATTC
AAGACAATGTGCTTATTGGTCCTCTTACCAGAACAACCCAGCCTGCCCTC
TCCTTTCTAAATCTTCAGTCTGCCTGTCCGTATCTCCCCGTTTCTCCCCC
TCATGGGGACTGAATTTAGAAACTCATATATAAGCAAGTATATACTAAGC
TTTACCTAAATTTCTAGCCTTTTTTGAGTCAGGATTTTTTTCCACGTTGT
TCAATTGGCTTTATACTCTTGATGTTCCTACTGCTGCCTCTCAAGGGCTG
GCTTACAGGGGTGACTCAGCATGCCTGCCTGCTCTCCCTAAATGTAGGTT
AGAAAGTGGAAAGGCTTGGTGAATGGGAGGTAGACACATGGCAGAGGCAG
CTTGTTCTTCCAGTTCTTTAACATATTAATTGGCTTATTTTGGCCTCTTA
TTCAAGACTCCTGTTGGTAATTAGGAAGATAATAGTTGTTCACTAAGCTG
AAAGTATACCACCACACTGGAAAGTCAAGCCATTGCTTGGGGGCCTTAGA
CAGAGTTGAAAGGAACAGCTTGGAAGAGTGAGAGACTGGTAATTAAGAAC
CTGACAGGCCAGGGTTGGAAGTGACAAATATTTCAACACAAACGTCTGAG
AAACCAAGAATTATGCCATCCAATTTATCATTGCAGTTTATAAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGATCCCCATTTTT
TAATAGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGTATTATTGACAGTTTCTTTTGCCTTGC
AGAAGCTTTGCAATTTTTTGAGGTCCCATTTGTCGATTCTCAATCTTAGA
GCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATC
TTCGAGGCTTTTCCTTCCTTTCTCCTCCATAAGTTTCGGTGTTTCTGGTT
TTATGTAGAGTTCCTTAATCCACTTAGATTTGACCTTAATACAAGGAGAT
AGGAACGGATCAATTCCCATTCTTCTACATGATAACCACCAGTTCTGCTG
GCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTC
CCTTGTCGAAGATCAAGTGACCATTGGGTGTGTGGGTTCATTTCTGGGTC
TTGAATTCTATTCCATTTGGCTACTTGACTGTCCCTATACCCGTACCATG
AAGGTTTTATGAAAATTGCACTGTAATACAGCTTTTTGGCCGGGACTGGG
GTTTTACCCGAGGTTCTTTTTTCTTGGAAAAAAATTTTTGCTATCCCATG
GTTTTTTTTTTCCTAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_g19.b1 MSMg01no368_g19.b1 CHROMAT_FILE:
MSMg01no368_g19.b1 PHD_FILE: MSMg01no368_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:51 2005
         (542 letters)



>mm_chr14_13522379_13523318
          Length = 940

 Score =  998 bits (516), Expect = 0.0
 Identities = 535/542 (98%), Gaps = 2/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcctttgactggatagtggaggattaaaaatggcacattcaagacaatgtgcttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctttgactggatagtggaggattaaaaatggcacattcaagacaatgtgcttattg 260

                                                                       
Query: 61  gtcctcttaccagaacaacccagcctgccctctcctttctaaatcttcagtctgcctgtc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtcctcttaccagaacaacccagcctgccccctcctttctaaatcttcagtctgcctgtc 320

                                                                       
Query: 121 cgtatctccccgtttctccccctcatggggactgaatttagaaactcatatataagcaag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtatctccccgtttcttcccctcatggggactgaatttagaaactcatatataagcaag 380

                                                                       
Query: 181 tatatactaagctttacctaaatttctagccttttttgagtcaggatttttttccacgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatactaagctttacctaaatttctagccttttttgagtcaggatttttttccacgtt 440

                                                                       
Query: 241 gttcaattggctttatactcttgatgttcctactgctgcctctcaagggctggcttacag 300
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gttcaattggctttagactcttgatgctcctactgctgcctctcaagggctggcttacag 500

                                                                       
Query: 301 gggtgactcagcatgcctgcctgctctccctaaatgtaggttagaaagtggaaaggcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgactcagcatgcctgcctgctctccctaaatgtaggttagaaagtggaaaggcttg 560

                                                                       
Query: 361 gtgaatgggaggtagacacatggcagaggcagcttgttcttccagttctttaacatatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaatgggaggtagacacatggcagaggcagcttgttcttccagttctttaacatatta 620

                                                                       
Query: 421 attggcttattttggcctcttattcaagactcctgttggtaattaggaagataatagttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attggcttattttggcctcttattcaagactcctgttggtaattaggaagataatagttg 680

                                                                       
Query: 481 ttcactaagctgaaagtataccaccacactggaaagtcaagccattgcttgggggcctta 540
           |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||
Sbjct: 681 ttcactaagctgaaagtataccaccac--tggaaaatcaagccattgcttgggggcctta 738

             
Query: 541 ga 542
           ||
Sbjct: 739 ga 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 940
Length adjustment: 10
Effective length of query: 532
Effective length of database: 930
Effective search space:   494760
Effective search space used:   494760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)