BAC Information

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BAC

Clone NameMSMg01-368M10
Chromosome14 (Build37)
Map Location 52,755,644 - 52,947,971
singlet/doubletdoublet
Overlap geneRpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2
Upstream geneRnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneOlfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368M10.T7 (MSMg01no368_m10.b1)MSMg01-368M10.TJ (MSMg01no368_m10.g1)
ACCAG475921AG475922
length782756
length of high quality
(start - end)		239 (70 - 308)498 (67 - 564)
definitionCHROMAT_FILE: MSMg01no368_m10.b1 PHD_FILE: MSMg01no368_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:19 2005CHROMAT_FILE: MSMg01no368_m10.g1 PHD_FILE: MSMg01no368_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,947,736 - 52,947,971)(52,755,644 - 52,756,141)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGAATT
CCTCTGCTTTCCAGAAGGTTTGCACTGGGGTACCGATACCCGTTGGCCTC
AGGCTAGACAGGGTGATCGGACCAGGTCACCCCATTAAAACTCAGTGCGC
GGTGAGGTGCCCTCCCTCTCTTACCGCTCACTACTCGGGAATGTCTCGGC
GAAAGCAACGGAGACCCCAACAGTTAATCTCGGACTGTGAAGGTCCCAGC
GCATCTGAGAACGGTGGGTGCTGGGGGCAGGAGGTAGCGGGGATTCGGGG
GGTGGNGGNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTTTTTCCCCCCCCCCTCCCTTTGGGGTTGTTCTCTTTCTTTTCTT
TTTCCCTGCCCCCCCCTTTTTTTTTTTTTGTGGGGTTTTCCGTTTTGGCT
CGCTTTTCCTCTTTTTTCTCCCTCTTTTTTCTTTTTTCTTTTGGTTTGGC
TCTCTTTTTTGTTTTTCTTCTTCCCTTTTGTGTTTTCTCTGCTCTTGGTT
CTTTTTCTTTCTTTTTCCCGTCTTTTTTTCTTTTTTCGTTTCTCTTTTTT
TTTTTGGTGTTGTTTCTCTCGTTTTCGCCGTTGTTCTTGTCTTTCCGCGT
TGTTGCGCTCCCCGCTTTCATTTTTTTTTTTTTTTGTGGTGCCTGCTTCC
CTTCTTTTGCGTTTTACCTCTCTCTCTCTTTTTCTCTTTTCTCCTTGNCT
TTTGTCGCCCATTTTTTTTTCTCTCGCTCGTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTTGTAGAGTTTGAGTCTGGCCTCAAACTCAG
AGATCTACCTACCTCTGTCTCCCAAGTGCTGGAGTTAATTAAAAGTGTGT
GCCACCACTACTGCTTTTGGTCAGGAAGCTTTTAATGTCAATGTCATTCC
ATTTGTATAAATGACTAAGACCTGGTCTTGTGTGTTTTACACTCAAGGCA
GGTCTAACAGCTAAATACCATGGGATGGAGTTGTAGGTGTTAAAAAGCTT
GTTTTCATTCTTGTTTATAGCTGGTAGTTTAAAGTTCTCTAAAGTAGCCA
CTGGCAAAGGGATATAAGGGGACAAGGTGAGAAAAGAAAGCTCTTGATTC
TCAGCTCTAACTCAGGAGGTCTGGGCGTGTCCTAACACTTCAGGCCCTGG
CCAAAGGAAGCCATCATACGGGAGACGTTCCTTGAGAAATGCATGATTAA
GGTGCTAGCGTAGTGGAACCCTCAAGACTTAAGCAGACGTGACACTGAGT
AACTCCTCAATGCCACCCAAAAGTTCCGAAACAGTTAGCAAGTGACAGTT
ACAAATAAAGCCTGGGCCGAAAAAAAAACCAACTAAACAAAACTTGTGGA
AAAAAGGATTTATCACCTAAGCCCCAGAAAAGTTGAAATTGGTGAACATA
AAATGCCGGAACATACCCCTTTTTAAGATCATCTTGAAACCCAACCCTGT
GGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_m10.b1 MSMg01no368_m10.b1 CHROMAT_FILE:
MSMg01no368_m10.b1 PHD_FILE: MSMg01no368_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:19 2005
         (239 letters)



>mm_chr14_52947536_52948174
          Length = 639

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcactggggtaccgatacccgttggcctcaggctagacagggtgatcggaccaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgcactggggtaccgatacccgttggcctcaggctagacagggtgatcggaccaggtca 377

                                                                       
Query: 61  ccccattaaaactcagtgcgcggtgaggtgccctccctctcttaccgctcactactcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccccattaaaactcagtgcgcggtgaggtgccctccctctcttaccgctcactactcggg 317

                                                                       
Query: 121 aatgtctcggcgaaagcaacggagaccccaacagttaatctcggactgtgaaggtcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatgtctcggcgaaagcaacggagaccccaacagttaatctcggactgtgaaggtcccag 257

                                                                   
Query: 181 cgcatctgagaacggtgggtgctgggggcaggaggtagcggggattcggggggtgg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cgcatctgagaacggtgggtgctgggggcaggaggtagcggggattcggggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no368_m10.g1 MSMg01no368_m10.g1 CHROMAT_FILE:
MSMg01no368_m10.g1 PHD_FILE: MSMg01no368_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:19 2005
         (498 letters)



>mm_chr14_52755444_52756341
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagagtttgagtctggcctcaaactcagagatctacctacctctgtctcccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagagtttgagtctggcctcaaactcagagatctacctacctctgtctcccaag 260

                                                                       
Query: 61  tgctggagttaattaaaagtgtgtgccaccactactgcttttggtcaggaagcttttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctggagttaattaaaagtgtgtgccaccactactgcttttggtcaggaagcttttaat 320

                                                                       
Query: 121 gtcaatgtcattccatttgtataaatgactaagacctggtcttgtgtgttttacactcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaatgtcattccatttgtataaatgactaagacctggtcttgtgtgttttacactcaa 380

                                                                       
Query: 181 ggcaggtctaacagctaaataccatgggatggagttgtaggtgttaaaaagcttgttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaggtctaacagctaaataccatgggatggagttgtaggtgttaaaaagcttgttttc 440

                                                                       
Query: 241 attcttgtttatagctggtagtttaaagttctctaaagtagccactggcaaagggatata 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcttgagtatagctggtagtttaaagttctctaaagtagccactggcaaagggatata 500

                                                                       
Query: 301 aggggacaaggtgagaaaagaaagctcttgattctcagctctaactcaggaggtctgggc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aggggacaaggtgagaaaagaaagctcttgattctcagttctaactcaggaggtctgggc 560

                                                                       
Query: 361 gtgtcctaacacttcaggccctggccaaaggaagccatcatacgggagacgttccttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtcctaacacttcaggccctggccaaaggaagccatcatacgggagacgttccttgag 620

                                                                       
Query: 421 aaatgcatgattaaggtgctagcgtagtggaaccctcaagacttaagcagacgtgacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcatgattaaggtgctagcgtagtggaaccctcaagacttaagcagacgtgacact 680

                             
Query: 481 gagtaactcctcaatgcc 498
           ||||||||||||||||||
Sbjct: 681 gagtaactcctcaatgcc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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