BAC Information

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BAC

Clone NameMSMg01-368O15
Chromosome14 (Build37)
Map Location 12,413,805 - 12,414,315
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O15.T7 (MSMg01no368_o15.b1)MSMg01-368O15.TJ (MSMg01no368_o15.g1)
ACCAG476027AG476028
length716788
length of high quality
(start - end)
511 (67 - 577)65 (74 - 138)
definitionCHROMAT_FILE: MSMg01no368_o15.b1 PHD_FILE: MSMg01no368_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:29 2005CHROMAT_FILE: MSMg01no368_o15.g1 PHD_FILE: MSMg01no368_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTC
TTGTCTTATCTTCTAGGACATTATAGGCCACCTTTGCTGGCAGAACTATC
TCCATGTTTGCCTTCATGGCTGTGCGTGTGTCCCCCACATTTCCACATTT
TATAAGAATACCAATCATCTTGGCTGCAGGTCATCTCAACTCAATTCAGT
TTGCAGTTATTTGAGATCAGATGATGAGCCACTGACACTTAGGCCACAGG
ATGTTTTGGGGGACACAACTGTCATGACACAAGCTACTAGCTTTGTGTCT
CTAGACTTTCTAATAATATTGGCCTCAGCCAGGCAACCTACACGCTCAAA
ATTAGCAGCGCTCTGCTGTGTGGTGGAGCCTCTCAGTGCTCCACTCTTCG
CATTCTTCACCACACCAAACACATGCATTTGTGTTCCTGATGGCTGTAGC
GGTCTCATTACTACAATAGAAGGAAGCACACCTGGAGACAAACGGACACA
CTGCAGAATCTTCTGCTTGTCGTCTTCTTCTGGGTCTCCAAAGCATAATG
ATTATAATCTCCAGTCACAAACAGGAATACTCGGATTTCAATCAAGCTCA
TTAGTAGGCTATTACCACAACTCTCAGGATGTTATTACAGACATAACACT
GCATGTTTAGGGTAATTCAAAGGATTCGTCATTGGTAATCTTGGACCGGC
TGATACAATACGTGAG
NCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGACACACTCCAGGTTCAGTGAAAGACCCTTTGTCA
GGGGTGTGTGTGTGTGTGTCCCCCTGTGATGTGTGTGTGTGAGTGTCTAN
AGANNNTTTCCTTTTTTCTTGTCTCTTACCCTCCCCCCTCTCCCCACCCC
ACACCCCCCCCACCCCACCCCCACCCCCCACCCCCCCCTCTCCCCCCCAC
CCTCTTTTTTCCTCCCCCCCCCCCCCCCCCGCCCTCCCCCTCCCCCCCCC
CCTCCCCCCCCCCCCCCCCCCCCTTTCCCTCCCTCTTCCCAACCCCCCCC
ACCCCCCATCCCTCACCCTTTTCTCCCCCCCCCCCCCCCCCTTTCCCCCT
TTTCCCCCATTTCCCCCCCCTTTTTTTTTTTCCCCCCCCCCCCTTTTAAT
TATATAAAATATATACCCTCCCCCCCCATCCCTCCCCCCCCCCCCCCCCC
CCACCCCCCCTACCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCC
CCCCCTCCTCCCCCCCCCTCCATCCCCCCCTCCCTCCCCCCCCCCCCCCC
CTTCCCCCCCCCCCCACCCTCCCATCCTCCCTTCCCCCCTCCCCCTCACC
CCCCCCCACACCTCCTCTTCACCCCCTCTCACCTCCCCTCTACCCCACCC
CTCCCATCCTTCTTTCCTCCTCCCCCCTCTTCCCATCCCCCCCTCCTACA
TCCACCCACTCCCTCCCCCCTCCCCCTCCCCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o15.b1 MSMg01no368_o15.b1 CHROMAT_FILE:
MSMg01no368_o15.b1 PHD_FILE: MSMg01no368_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:29 2005
         (511 letters)



>mm_chr14_12413605_12414515
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacattataggccacctttgctggcagaactatctccatgtttgccttcatggctgtgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacattataggccacctttgctggcagaactatctccatgtttgccttcatggctgtgcg 260

                                                                       
Query: 61  tgtgtcccccacatttccacattttataagaataccaatcatcttggctgcaggtcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtcccccacatttccacattttataagaataccaatcatcttggctgcaggtcatct 320

                                                                       
Query: 121 caactcaattcagtttgcagttatttgagatcagatgatgagccactgacacttaggcca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 caactcaattcagtttgcagttatttgaggtcagatgatgagccactgacacttaggcca 380

                                                                       
Query: 181 caggatgttttgggggacacaactgtcatgacacaagctactagctttgtgtctctagac 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 caggatgttttgggggacacaactgtcatgacacaagttactagctttgtgtctctagac 440

                                                                       
Query: 241 tttctaataatattggcctcagccaggcaacctacacgctcaaaattagcagcgctctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctaataatattggcctcagccaggcaacctacacgctcaaaattagcagcgctctgc 500

                                                                       
Query: 301 tgtgtggtggagcctctcagtgctccactcttcgcattcttcaccacaccaaacacatgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgtgtggtggagcctctcagtgctccactcttcgcattcttcaccacagcaaacacatgc 560

                                                                       
Query: 361 atttgtgttcctgatggctgtagcggtctcattactacaatagaaggaagcacacctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgtgttcctgatggctgtagcggtctcattactacaatagaaggaagcacacctgga 620

                                                                       
Query: 421 gacaaacggacacactgcagaatcttctgcttgtcgtcttcttctgggtctccaaagcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacaaacggacacactgcagaatcttctgcttgtcgtcttcttctgggtctccaaagcat 680

                                          
Query: 481 aatgattataatctccagtcacaaacaggaa 511
           ||||| |||||||||||||||||||||||||
Sbjct: 681 aatgagtataatctccagtcacaaacaggaa 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)