BAC Information

Click to search

BAC

Clone NameMSMg01-369C18
Chromosome14 (Build37)
Map Location 92,606,294 - 92,779,318
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C18.T7 (MSMg01no369_c18.b1)MSMg01-369C18.TJ (MSMg01no369_c18.g1)
ACCAG476224AG476225
length732733
length of high quality
(start - end)		489 (46 - 534)464 (77 - 540)
definitionCHROMAT_FILE: MSMg01no369_c18.b1 PHD_FILE: MSMg01no369_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:49 2005CHROMAT_FILE: MSMg01no369_c18.g1 PHD_FILE: MSMg01no369_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,606,294 - 92,606,778)(92,778,855 - 92,779,318)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATCCCAATCACTATTTCCAGACACGTGTATTTTGCACTTTTT
ATATCCTCCATGGTCTGGGAAGTATAATTACTGTCAAAGTTGACTTTGAA
CATTTTAACAGGAGTAAATGCCTCCTTTTCATTCACCATTGTAATCTCTC
TCATATTGCTGCTATGATATTGTGGTATTAGATTTCATGTGATACCAATA
AATTATTAAAAAGAGAAGTGAAAATAATTACAGAAAATATTGGCTGCATT
TGAAGAATAACTTGATCTGGTTTTGCATGTAATACAAATAATAGACAACA
AATGTTTGTTTAGTAGAATGACAATAACACAAATTTTAATTCTTCACTAA
AGACTGGTTAAATTTTTAAATGAAATATGAAGATAAGGTTTTAATTACTT
GCCACAACTCAGCTTTAATTGATTCATGCACAGAAAATGCCTAGGAGTTC
CCACACCGTAAAATACTGCTACCACATTGCCAAGGTGTATAAGCCTATCA
AGTGGCTGCTAAAAGTTTTTAAACATGCTCACAAAACTATTTCAAAGTCA
CCATAAAATGCAAAATTTATTGCAACAACAATTTAATTAAAACCCTTGTT
GGGGAAAATAAAAACTAAAATAAAAAATTTTTTCAATTTTCCTATCCGGG
TTCCTGAAACAAACCGCTAGAGTCACCTTTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAGAGGTATAACATTTATAT
GTAGTCTTAGTTTCTTTATCATTATTATTTTTAAAAATATACTATAACCC
AAATAAAATATTTTCCAGTTAATTTCATATATATTTTAAACTAATATATA
TGACACAATCTCTAAAATATGACATTTAAATATTTATTTGCTGCACATTT
AAACTTTGTTTACATTGAAGAAATTTATATAAATATTGTCAGCATGTTAT
TTCTGAGAGATCTACAGCTTTTGAGAGAGAGTACTTCTTAATTATGCTTG
AGAAAATTTAGGAAGTAGCATATATAATTATATATGCATAAATTAGCATT
TAATAGTAGCAATGGGTTACCTACATTTAGATATATAAAAAATTCAATTT
AAGTCTTCAAATATATCTTATTTGTCTTAGGATATGAATTATAACATTAN
ACCAAGACAGAACCTAGAAAGAATATTCTGAAACAAAATATGGGAGAATG
GGGGGGGAGGTACAAAGAAAGAGCACACCAAATGAATGAAATTTCAATTA
ATAGATTCATTGTACTTTAGTTATAAATGATGTGTCTTAGTTAAGGTTTT
ACTGCTGTGAAAAGACACCATTTACAGAGCACGTATTATGAGGATAACAT
TATATTATGGCTGGCTTAAAGGTTTCGAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c18.b1 MSMg01no369_c18.b1 CHROMAT_FILE:
MSMg01no369_c18.b1 PHD_FILE: MSMg01no369_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:49 2005
         (489 letters)



>mm_chr14_92606090_92606978
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaatcccaatcactatttccagacacgtgtattttgcactttttatatcctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaatcccaatcactatttccagacacgtgtattttgcactttttatatcctcc 264

                                                                       
Query: 65  atggtctgggaagtataattactgtcaaagttgactttgaacattttaacaggagtaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggtctgggaagtataattactgtcaaagttgactttgaacattttaacaggagtaaat 324

                                                                       
Query: 125 gcctccttttcattcaccattgtaatctctctcatattgctgctatgatattgtggtatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctccttttcattcaccattgtaatctctctcatattgctgctatgatattgtggtatt 384

                                                                       
Query: 185 agatttcatgtgataccaataaattattaaaaagagaagtgaaaataattacagaaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatttcatgtgataccaataaattattaaaaagagaagtgaaaataattacagaaaata 444

                                                                       
Query: 245 ttggctgcatttgaagaataacttgatctggttttgcatgtaatacaaataatagacaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggctgcatttgaagaataacttgatctggttttgcatgtaatacaaataatagacaac 504

                                                                       
Query: 305 aaatgtttgtttagtagaatgacaataacacaaattttaattcttcactaaagactggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgtttgtttagtagaatgacaataacacaaattttaattcttcactaaagactggtt 564

                                                                       
Query: 365 aaatttttaaatgaaatatgaagataaggttttaattacttgccacaactcagctttaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatttttaaatgaaatatgaagataaggttttaattacttgccacaactcagctttaat 624

                                                                       
Query: 425 tgattcatgcacagaaaatgcctaggagttcccacaccgtaaaatactgctaccacattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgattcatgcacagaaaatgcctaggagttcccacaccgtaaaatactgctaccacattg 684

                
Query: 485 ccaag 489
           |||||
Sbjct: 685 ccaag 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no369_c18.g1 MSMg01no369_c18.g1 CHROMAT_FILE:
MSMg01no369_c18.g1 PHD_FILE: MSMg01no369_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:49 2005
         (464 letters)



>mm_chr14_92778590_92779453
          Length = 864

 Score =  891 bits (461), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaagaggtataacatttatatgtagtcttagtttctttatcattattatttttaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ataaaagaggtataacatttatatgtagtcttagtttctttatcattattatttttaaaa 670

                                                                       
Query: 61  atatactataacccaaataaaatattttccagttaatttcatatatattttaaactaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atatactataacccaaataaaatattttccagttaatttcatatatattttaaactaata 610

                                                                       
Query: 121 tatatgacacaatctctaaaatatgacatttaaatatttatttgctgcacatttaaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tatatgacacaatctctaaaatatgacatttaaatatttatttgctgcacatttaaactt 550

                                                                       
Query: 181 tgtttacattgaagaaatttatataaatattgtcagcatgttatttctgagagatctaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtttacattgaagaaatttatataaatattgtcagcatgttatttctgagagatctaca 490

                                                                       
Query: 241 gcttttgagagagagtacttcttaattatgcttgagaaaatttaggaagtagcatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gcttttgagagagagtacttcttaattatgcttgagaaaatttaggaagtagcatatata 430

                                                                       
Query: 301 attatatatgcataaattagcatttaatagtagcaatgggttacctacatttagatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attatatatgcataaattagcatttaatagtagcaatgggttacctacatttagatatat 370

                                                                       
Query: 361 aaaaaattcaatttaagtcttcaaatatatcttatttgtcttaggatatgaattataaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaaattcaatttaagtcttcaaatatatcttatttgtcttaggatatgaattataaca 310

                                                       
Query: 421 ttanaccaagacagaacctagaaagaatattctgaaacaaaata 464
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttaaaccaagacagaacctagaaagaatattctgaaacaaaata 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |