BAC Information

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BAC

Clone NameMSMg01-369L03
Chromosome14 (Build37)
Map Location 110,435,020 - 110,435,446
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369L03.T7 (MSMg01no369_l03.b1)MSMg01-369L03.TJ (MSMg01no369_l03.g1)
ACCAG476619AG476620
length731783
length of high quality
(start - end)
77 (268 - 344)430 (64 - 493)
definitionCHROMAT_FILE: MSMg01no369_l03.b1 PHD_FILE: MSMg01no369_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:29 2005CHROMAT_FILE: MSMg01no369_l03.g1 PHD_FILE: MSMg01no369_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTACTATAGC
ATGAGATATGAATATTTCTTTTTTCATTAAATATATCTTTTGATTTGGGG
GTTATTGGTTAATTGCACAGTTATGTTGAAACATCTTGACAAAATCAGCT
TATCCTCAGAATTCACTTTTGTGCCTAGTTGAAAAAGAAATGGTTTCATT
ACACAGGAATCACTATTCAAAGCCATATGGCAATTTTTTCGTGGGGATAG
TGGATCATTGTCTTCCAGAATCCTTATTCTAAAATAGGACTTCATCATGG
CTCTTATTACATCTTTTCAGGACCTTGGATCTCTCTGGTGAGGCCCAAGA
ATGGACGTTTTATTCATTTGATAATTATTACCTGCTGAAATACTCAAAGA
AGATGCGGATTATGTAAATTTTTTCTTGGTTGATCACATTGGGTAATCAC
AGAGTACCACCCCACATTCCCTTATATTTTTATCGCTTCCATATCAGATA
TGCCTGCGCGGTTATAATTAAAACCTCCCCCCCGAGTGGAAAATCCACCC
ACTATCCATCCACCTATCCAATCACCTACCCAACCATCTACTTACCCCAC
CCTCCACCCCTAATCTTTCCCCCTACCTACTCCCCTTTCCCCACCCTCTT
GGGTGTTACCCCCTTCCCCCGTGCCCCCTTACTCTCTTCGCATCCCTCCC
CGCGCCCCCCCTCTTCCCCACCCCTTCCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGGGTTAGGTTCCTCTTCCTTACTGTGTCAATGTG
ACAGAAACTAATCAGAAAAACACTAATGATGTATTAAACTAAAATAGCAG
ATCATAAACTTCAAACATTGCACGTTTATAGGCACTACGATTACAAGGAT
GTGACCTAGAACAGTCACCTAGGAATACTCAGTATGATTCTCCCAATGAA
CAATAATAAAAGCATAAAGCACTATTTTTAAATTTCTACATGGCAAAATA
ATACTTTTTATATATTTGTACATAGCAGAGTTTAACCTTTAGTAATTGCT
CTAATTAAAATTTAATATGCTTTTACTTCTCTATGTAAAAAAAAATCACA
AAACGTAAGAGATATCAAAACATTTCAGATGATTCAGTGTGTACTCATAG
GTTAAGGAGTATCCTAAAGTTGTTAGAGCTCTTTATATTTTCAGAAATTC
ATCTTGAAGCTCTGTTTTTCTACACTAAATCCTCTGGCATCTTATTTAGA
GCCATGCTTGAATGTCTTGATAATCAGTCTCTTTTTCCTATGAACCCCAT
GACTTACTTTTATTATTACATTTATTCGCGATTAACATTGATAGGAACAG
CACTTAACCTCCATTTTTTTTCTTTTCCATACGTTTTACCATAATATCAA
ACTCCCTTCCTGGCGTGAAACACCTTCCTTGCGTCCCTTCTATTTATTTT
TTGTTTGCTTGTCTCAAGAATCTCCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_l03.g1 MSMg01no369_l03.g1 CHROMAT_FILE:
MSMg01no369_l03.g1 PHD_FILE: MSMg01no369_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:29 2005
         (430 letters)



>mm_chr14_110434820_110435646
          Length = 827

 Score =  729 bits (377), Expect = 0.0
 Identities = 417/431 (96%), Gaps = 5/431 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggttaggttcctcttccttactgtgtcaatgtgacagaaactaatcagaaaaacac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgggttacgttcctcttccttactgtgtcaatgtgacagaaactaatcagaaaaacac 260

                                                                       
Query: 61  taatgatgtattaaactaaaatagcagatcataaacttcaaacattgcacgtttataggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgatgtattaaactaaaatagcagatcataaacttcaaacattgcacgtttataggc 320

                                                                       
Query: 121 actacgattacaaggatgtgacctagaacagtcacctaggaatactcagtatgattctcc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 321 actacgattacaaggatgtgacctagaacagtcacctaggaatattcagtatgattctca 380

                                                                       
Query: 181 caatgaacaataataaaagcataaagcactatttttaaatttctacatggcaaaataata 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 caatgaacaataataaaagcataaagcactatttttaaatttcaacatggcaaaataata 440

                                                                       
Query: 241 cttttt-atatatttgtacatagcagagtttaacctttagtaattgctctaattaaaatt 299
            ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 441 -tttttcatatatttgtacatagcagagattaacctttattaattgctctaattaaaatt 499

                                                                       
Query: 300 taatatgcttttacttctctatgtaaaaaaaaatcacaaaacgtaagagatatcaaaaca 359
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 500 taatatgcttttacttctctatgtaaaaaaaa-tcacaaaatgtaagagatatcaaaaca 558

                                                                       
Query: 360 tttcagatgattcagtgtgtactcataggttaaggagtatcctaaagttgttagagctct 419
           |  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 559 t--cagatgattcagtgtttactcataggttaaggagtatcctaaagttattagagctct 616

                      
Query: 420 ttatattttca 430
           |||||||||||
Sbjct: 617 ttatattttca 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 827
Length adjustment: 9
Effective length of query: 421
Effective length of database: 818
Effective search space:   344378
Effective search space used:   344378
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)